Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00369 ATGGTGGAGGAAGAGAAGCTTAAAGTACCTGCTGAAGATTTGGAAGAAGATGAGCCACAGGGAGAGTCTGGTGGGTGTATTGGCATGGCTCTGTACTGGTTCAAAGTACTTGTTGCTGAAATGCATTGGAGTTTTGTGTTAGGAGTAGTGATTGTTTATGGAATTAGTCAGGGATTGGGCGGTGCGCTTAACCGTGTGGCAACCAAGTATTATATGAAGGATGTTCAGAAAGTGCAGCCATCTGGAGCACAGTTTTATTCAGGGATTACCTCAATTCCTTGGATGGTTAAGCCTATATGGGGGCTTTTCACTGATTTAGTGCCCATTTTTGGATATCACAGGCGGCCATACTTCGTTTTTGCAGGTCTTCTTGGTGTAATCTCCTTGCTTTCACTATCATTACTCGAAAAGCTGCATCTTCCACTCGCGATTTTGTTGTTAACCGTGGGAAGTGCCGGAGTAGCCATTGCAGACGTCACCATTGATGCTTGTGTAGCACAGAACAGCAGCTTTCATCCTACCCTTGCAGCTGATTTGCAAAGCTTGTGCGCCTTGAGTTCTTCCATTGGAGCATTACTTGGCTTCTCCATTAGCGGTATCTTTGTTCATCTGATAGGCCCCAAGGGAGTGTATGGCTTGTTAGCAATACCTGGAGGGCTTGTCTTATTGGTTGGAGTTCTACTGAATGAACCTCATATGCCAAACTTCAATTACAGACAGGTAAGTGAAAAGTTTGTCAGTGCAGGGAGGGCTATGTGGATGACATTGAAGATACCCAATGTCTGGAGGCCATGCCTCTATATGTATCTATCCCTTGCACTGTGCCTGGACATCAATGAAGGCCTGTTCTATTGGTACACTGACTCAAAAGATGGTCCAAAATTCTCTCAGGAAAATGTTGGTTTCATATTCTCAATTGGTTCAGTTGGGTCACTTTTAGGAGCTTTACTGTACCAATATGTTCTTAAGGGTCATCAGTTCCAAGACTTATTGTTCTGGACTCAATTGATATTCAGTTTATCTGGGATGCTGGATTTCTTGCTGGTTTTACGTTTAAACTTGAAATTTGGACTACCAGATTATTTCTTCATTGTGATAGATGAGAGTGTGCATCAGCTTGTCAATAGGCTAAAATGGATGCCTCTTCTAGTTCTAAGCTCCAAGCTTTGTCCAAGAGGCATTGAGGGAACTTTCTTCGCTTTGCTTATGTCGATTGACAATGTTGGACTTCTCTCAGCGTCTTGGGGAGGCGGGTTCTTGCTCCATATCCTTAATGTAACACGAACGAAGTTTCATAATCTATGGCTAGCCATTTTGATAAGGAACTGCTTGAGACTCGTTCCGCTGTGTATGCTGTTTTTGGTGCCTAGAGGTGATTCGAATTCTTCGATTCTTATAACCGAACTGCCGAGTTCAGACGTCGATAACGAGATTTCTGAAGCGAATAACATTGAACTGGTTTCTCTTGTGAATGGCATTGACATAGATAATCAGAAGGAAGCTTTCTGA 1509 43.14 MVEEEKLKVPAEDLEEDEPQGESGGCIGMALYWFKVLVAEMHWSFVLGVVIVYGISQGLGGALNRVATKYYMKDVQKVQPSGAQFYSGITSIPWMVKPIWGLFTDLVPIFGYHRRPYFVFAGLLGVISLLSLSLLEKLHLPLAILLLTVGSAGVAIADVTIDACVAQNSSFHPTLAADLQSLCALSSSIGALLGFSISGIFVHLIGPKGVYGLLAIPGGLVLLVGVLLNEPHMPNFNYRQVSEKFVSAGRAMWMTLKIPNVWRPCLYMYLSLALCLDINEGLFYWYTDSKDGPKFSQENVGFIFSIGSVGSLLGALLYQYVLKGHQFQDLLFWTQLIFSLSGMLDFLLVLRLNLKFGLPDYFFIVIDESVHQLVNRLKWMPLLVLSSKLCPRGIEGTFFALLMSIDNVGLLSASWGGGFLLHILNVTRTKFHNLWLAILIRNCLRLVPLCMLFLVPRGDSNSSILITELPSSDVDNEISEANNIELVSLVNGIDIDNQKEAF 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1902458 1906892 - CmaCh12G003690.1 Cma12g00369 304859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00369 502 Gene3D MFS general substrate transporter like domains 41 445 IPR036259 -
Cma12g00369 502 CDD MFS_FBT 48 453 - -
Cma12g00369 502 PANTHER FOLATE-BIOPTERIN TRANSPORTER 2-RELATED 14 495 - -
Cma12g00369 502 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 14 495 IPR039309 -
Cma12g00369 502 SUPERFAMILY MFS general substrate transporter 47 455 IPR036259 -
Cma12g00369 502 MobiDBLite consensus disorder prediction 1 22 - -
Cma12g00369 502 Pfam BT1 family 265 457 IPR039309 -
Cma12g00369 502 Pfam BT1 family 57 224 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00369 - - - csv:101209519 852.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00343 Cma12g00369 CCT
Cma05g00343 Cma12g00369 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00346 Cma-Chr5:1528287 Cma12g00369 Cma-Chr12:1902458 1.11E-133 dispersed
Cma12g00369 Cma-Chr12:1902458 Cma17g00227 Cma-Chr17:1156704 1.64E-39 dispersed
Cma12g00369 Cma-Chr12:1902458 Cma05g00343 Cma-Chr5:1502821 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g596 . . . . Bpe02g01267 . . . Cmo05g00347 Cmo12g00322 . Cma05g00343 . Car12g00352 Sed03g1651 Cpe07g00327 . Bhi04g00059 Tan02g2774 Cmetu03g2123 . Hepe10g0210 . Lcy13g1840 . . . . . . . . . . . . . . Cme03g01568 . . Bda01g01018 . . . Bma01g01261 . . . . . Cma12g00369 . Car05g00289 Cpe11g00289 . . . . . . . . Cla08g01373 Cam08g1842 Cec08g1420 Cco08g1553 Clacu08g1537 . Cre08g1320 Lsi08g01256 . Chy03g01078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004718 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 2 1 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00369 Cma_Chr12 FPKM 11.783863 13.031744 7.776505 6.563232 11.662935 10.178651 13.833639 2.541332 2.592433 3.292902