Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00377 ATGGCTTCGAAGCTTTGTGATTCCTGTAAGGTGGCCGCTGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTTCTTTGCCTTGGCTGCGACTCCAAAGTCCATGCAGCCAACAAGCTTGCTTCCCGCCATGCGCGCGTATGGCTTTGTGAAGTCTGTGAGCAAGCTCCTGCACATGTTACCTGCAAGGCCGACGCTGCTGCTCTCTGCATCACTTGCGACCACGATATCCACTCTGCCAATCCCCTCGCTCGCCGTCATGAGCGAGTTCCTGTCACGCCTTTCTACGACTCTTCCAACTCCGACAACTCTCTCGCCGTTAAGCCTGCCGCTGCAATCAACTTCCTAGATGATCGTTATTTCTCTGATGTCAACACCGACGCCGCCGAAGAGGCCGAAGCTGCTTCCTGGCTTCTTCCAAACCCTAACCCTAAGCCAATCGAAAATACAGATCTGAACTCGGGGAAGTTAGAGTTTCTAGAAATGGATCCTTACCTAGATCTGGATTACGACCGCGTAGATCCGAAATTAGAAGTGCGAGAGCATAACAGCTCCGCCGCCGATGGAGTCGTTCCGGTTCAGAGCAAAGGCGTCGATCTCTCATCGGTGAACGATCGTAGCTTCGGCATCGACTTCCCGTGCGCCAAATCGTTCCCGTACAGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCGTCGATCGAGGTCGGAGTCGTTCCGGAGGGGAATACGATAACGGAGATATCGAATCCGTACACGAAACCGTCGACGGAATCGACTGTTCCACCGCTGCAAATCTCGCCGGCAGATCGAGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAGTTCGAGAAGACGATTCGATACGCATCTCGTAAGGCCTACGCCGAGAAGAGACCACGAATCAAGGGACGGTTCGCCAAACGGACGGACATCGAGTTGGAAGCCGACCGAGTGAGTGGATACGGCGTCGTTCCGTCGTTCTAA 1002 53.59 MASKLCDSCKVAAATLFCRADSAFLCLGCDSKVHAANKLASRHARVWLCEVCEQAPAHVTCKADAAALCITCDHDIHSANPLARRHERVPVTPFYDSSNSDNSLAVKPAAAINFLDDRYFSDVNTDAAEEAEAASWLLPNPNPKPIENTDLNSGKLEFLEMDPYLDLDYDRVDPKLEVREHNSSAADGVVPVQSKGVDLSSVNDRSFGIDFPCAKSFPYSYNPQSISHSVSSSSIEVGVVPEGNTITEISNPYTKPSTESTVPPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAEKRPRIKGRFAKRTDIELEADRVSGYGVVPSF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1944414 1946056 - CmaCh12G003770.1 Cma12g00377 304867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00377 333 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Cma12g00377 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 333 IPR045281 GO:0009909
Cma12g00377 333 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Cma12g00377 333 CDD Bbox1_BBX-like 5 48 - -
Cma12g00377 333 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Cma12g00377 333 ProSiteProfiles CCT domain profile. 272 314 IPR010402 GO:0005515
Cma12g00377 333 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 333 - -
Cma12g00377 333 CDD Bbox1_BBX-like 48 91 - -
Cma12g00377 333 SMART bboxneu5 49 91 IPR000315 GO:0008270
Cma12g00377 333 SMART bboxneu5 1 48 IPR000315 GO:0008270
Cma12g00377 333 Pfam CCT motif 272 314 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00338 Cma12g00377 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00418 Cma-Chr10:1909783 Cma12g00377 Cma-Chr12:1944414 2.17E-93 dispersed
Cma11g00415 Cma-Chr11:2035908 Cma12g00377 Cma-Chr12:1944414 2.63E-103 dispersed
Cma12g00377 Cma-Chr12:1944414 Cma14g01135 Cma-Chr14:8801250 2.59E-08 dispersed
Cma12g00377 Cma-Chr12:1944414 Cma05g00338 Cma-Chr5:1477963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35976 PF00643 zf-B_box 4.30E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00377 - - csv:101208063 579.326