Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00380 ATGAGGAGAAGAAAGGGTGTGAAATTAGGCGGTTTGTGGGTCTTGTTCATGGTCTTGGCGGCGGCGATGGCGGCGGAGGAGGAGGAGAAGACGGCGGCGGCAGTGGAAGTGAAGGTGGGCGTGGTTTTGAATCCTAATGCTTTTGGGAAGATGGGTATGGCCTGCATCTCAATGGCTCTCTCAGATTTCTATGCTTCTCGGAGTCATTACAGAACCAGAGTGATTCTCAAGACCGTGGATTCTAATGGCACTGTCGTTGATGCAGCCGCTGCAGCTCTAGATTTAATAAAGAAAGAGGAAGTTCAAGCCATAATAGGCCCAAAAACCTCGATGCAAGCCAGCTTCGTGATCGACGTCGGAGCCAAAGCACATGTACCCATCATCTCATTTTCCGCCACACGACCATCCCTAACATCCCACCGCAGTTCATTTTTCTTCCGAGCAGCCCAAGACGACGCTTCTCAAGTTAAAGCAATTGGTTCCATTGTAAAAGCCTTCAAATGGCGACGAGTCGTCCCAATCTACGTCGACGACATGTTCGGCGACGGCATCATCCCATACCTAATTGACGCCCTACAAAACGTCAACGCACACGTACCTTACCAAAGCATCATATCACCTACCGCCACCGACGACCAAATCATCGGAGAACTTTACAAGCTCATGACCATGCAAACAAGAGTGTTTGTAGTACACATGTTACATGGCCTCGCCTCACGCATATTCATTAAAGCCAAACAAATTGGAATGTTGAATAAAGGGTATGTTTGGATTGTTACAAATAGTATCACAAACGAGCTTGATTCAATAAATCATTCGATTGAATCAATGCAAGGAGTTATTGGAATAAAAACTTACGTCCCAAGAACTCAAAAGCTTGAAGCTTTTGAAGATTCATGGCAGAAGAGATTTGTAAAGTATTATCCAACAATCGAACACATCCCGGAGCTTGACGTGTTCGGATTATGGGCTTATGATGCGGCTTGGGCGTTGAACATCGCCGTGGAAGAGGCCGGCATTGACAGCCTTCGATATAGCCCGGCGAATGTCAAGGTGTTGAAAATGAACTCATCCAACTATTTACACAATTTGGGTGTAAATCAAAATGGTGTAAGGCTTCGTGATCGGCTCTCAAATGTTACGTTTGATGGGTTGGCCGGAAAATTTGTGCTTAGAAATGGGCAATTGGAGTCGGCGGTTTTTGAGATAGTGAATGTTATAGGTAATGGGAGGAGAAATGTGGGGTTTTGGTCGCCGGAGAGTGGGCTGACGAGGACGTTGGAGGGTTTGGGAGGAGGAGGTGGGTTGAAATCAGTTATTTGGCCGGGAGATCCTGGCCACCGGCCAAAAGGGTGGGAGGTTTCGACGGCGGAGAGGAAGTTGAGAGTGGTGGTTCCGGTGAAGGATGGGTTTTGGGAGTTTGTGAGTATAGTTCATGATGCTAAGACGAATACAACGAAAGTGAGTGGGTATTGTATTGAAGTATTCAAAGCTGTTGTTGAAGCGTTGCCTTATGCCGTTGGTTATGAGCTCATTCCCTTTCATAAAACCGCTGCGGAGCCTGGTGGTACCTATAATGACTTGGTTTATCAGATCTACCTTGGGAACTTCGATGCATTGGTGGGCGACCTAACAATCCGAGCAAACAGGTCAAAATACATCGACTACACATTACCCTTTGCAGAATCCGGGGTATCACTAGTGGTACCAATAAAGAGCGTGAAGAACACCAACGCATGGGTATTCATACAGCCACTAAAAGGGCGCCTATGGTCCCTCACAGGCGGCTTCTTCCTCATCATGGCACTCGTCGTATGGGTCCTCGAGCACCGCATCAACGAAGACTTCCGCGGCCACCCATTGAACCAAATCTGCACCAGCCTTTGGTACTCATTCTCCACCATGGTCTTCGCCCATCGGGAGATTACGTTCAATAACTGGACAAGATTCGTGGTGATTATATGGCTGTTTGTGGTTCTGATCATTACACAAAGCTACACTGCTAGTTTGGCCTCGTATTTGACGGTTCAAGAATTTAAACCGGCTGTGACGGATATCCATCAGCTGCAAAGGAATGGGGAGTTCGTTGGGCATAAAGTTGGGTCTTTTATTCGGGAGATTCTTAAGTCATTGGAGTTTGATGAATCCCAGCTTAGAACTTACCGTACTGCTGAAGAATTGCATGAACTTTTATCTAAAGGAAGCTCTAATGGGGGAATTTCGGCCGCCATGGATGAAATTCCTTATATCAAGCTGTTTCTGGCTAAGTATTGCTCGCAATATACTACTACAGAACCTACTTATAAAGCTGATGGCTTTGGTTTTGGCTTCCCAATAGGTTCGGCGTTAGCTTCAGACATCTCGAGAGCGATCTTGGAGGTGACAGAGAGCGACAGAATGAGAGAGATCGAGAATGCATGGTTCAAAAAAGTGAGAGAATGTTCGGTTTCTGAAGCCTCTCAATTGTCTTCGACACGTTTGAGCGTCGACAGTTTTTGGGCACTTTTCGTGATCGTGGCAGGTGTTTCTGCAGTTTGTATCATTTGTTATATCGTCAAATTTCTGTACGACGAGCGAGGCCTATGGTGGTATACAAATGCTCCAAAGCGGCAAAGATTCCACCAAGTGGGGCGCAAGTTCATGGATAGAGATGCAAGAGCTTACCGGCTGCAACGAAGGGCATTTAGAAATGGTATTCGTGTTCATCCGGATCATCACCCTCCAGCTAATTGA 2733 46.62 MRRRKGVKLGGLWVLFMVLAAAMAAEEEEKTAAAVEVKVGVVLNPNAFGKMGMACISMALSDFYASRSHYRTRVILKTVDSNGTVVDAAAAALDLIKKEEVQAIIGPKTSMQASFVIDVGAKAHVPIISFSATRPSLTSHRSSFFFRAAQDDASQVKAIGSIVKAFKWRRVVPIYVDDMFGDGIIPYLIDALQNVNAHVPYQSIISPTATDDQIIGELYKLMTMQTRVFVVHMLHGLASRIFIKAKQIGMLNKGYVWIVTNSITNELDSINHSIESMQGVIGIKTYVPRTQKLEAFEDSWQKRFVKYYPTIEHIPELDVFGLWAYDAAWALNIAVEEAGIDSLRYSPANVKVLKMNSSNYLHNLGVNQNGVRLRDRLSNVTFDGLAGKFVLRNGQLESAVFEIVNVIGNGRRNVGFWSPESGLTRTLEGLGGGGGLKSVIWPGDPGHRPKGWEVSTAERKLRVVVPVKDGFWEFVSIVHDAKTNTTKVSGYCIEVFKAVVEALPYAVGYELIPFHKTAAEPGGTYNDLVYQIYLGNFDALVGDLTIRANRSKYIDYTLPFAESGVSLVVPIKSVKNTNAWVFIQPLKGRLWSLTGGFFLIMALVVWVLEHRINEDFRGHPLNQICTSLWYSFSTMVFAHREITFNNWTRFVVIIWLFVVLIITQSYTASLASYLTVQEFKPAVTDIHQLQRNGEFVGHKVGSFIREILKSLEFDESQLRTYRTAEELHELLSKGSSNGGISAAMDEIPYIKLFLAKYCSQYTTTEPTYKADGFGFGFPIGSALASDISRAILEVTESDRMREIENAWFKKVRECSVSEASQLSSTRLSVDSFWALFVIVAGVSAVCIICYIVKFLYDERGLWWYTNAPKRQRFHQVGRKFMDRDARAYRLQRRAFRNGIRVHPDHHPPAN 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1953960 1959829 + CmaCh12G003800.1 Cma12g00380 304870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00380 910 SUPERFAMILY Periplasmic binding protein-like II 439 809 - -
Cma12g00380 910 CDD PBP1_GABAb_receptor_plant 38 427 IPR044440 -
Cma12g00380 910 Gene3D - 461 578 - -
Cma12g00380 910 PIRSF IGluLR_plant 7 908 IPR017103 -
Cma12g00380 910 Gene3D - 158 319 - -
Cma12g00380 910 Gene3D - 755 816 - -
Cma12g00380 910 SMART GluR_14 460 810 IPR001320 GO:0015276|GO:0016020
Cma12g00380 910 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
Cma12g00380 910 CDD GluR_Plant 459 808 - -
Cma12g00380 910 Gene3D - 349 460 - -
Cma12g00380 910 Pfam Receptor family ligand binding region 55 408 IPR001828 -
Cma12g00380 910 Gene3D - 64 157 - -
Cma12g00380 910 Pfam Bacterial extracellular solute-binding proteins, family 3 484 809 IPR001638 -
Cma12g00380 910 Gene3D - 579 715 - -
Cma12g00380 910 SUPERFAMILY Periplasmic binding protein-like I 37 452 IPR028082 -
Cma12g00380 910 PANTHER GLUTAMATE RECEPTOR 2.9 37 868 - -
Cma12g00380 910 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 868 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00380 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101204040 1318.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00831 Cma-Chr9:4081071 Cma12g00380 Cma-Chr12:1953960 2.88E-122 dispersed
Cma12g00380 Cma-Chr12:1953960 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma12g00380 Cma-Chr12:1953960 Cma12g00381 Cma-Chr12:1962550 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g631 . . . . . . . . . Cmo12g00332 . . . . . Cpe07g00336 . Bhi04g00081 Tan02g2792 . . Hepe10g0197 . Lcy13g1866 . . . . . . . . . . . . . . Cme03g01551 . . Bda01g01359 . . . . . . . . . Cma12g00380 . . . . . . . . . . . . . . . . . . . . Chy03g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00380 Cma_Chr12 FPKM 50.091526 54.227715 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0