Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00381 ATGTTAGTCACGGTGGCGACCACCGAGATGGCGGCGGAGGAGGAGGCGGCCGGAAAAGTGAAAGTGAAGGTGGGTGTGGTTTTGGATTTGAATCTTGTTGTTGGGCAGATGGGGTTGAGCTGTGTTTCAATGGCTCTAGCTGATTTGTATTCTTCTCGGAGTTATTACAAGACTAGAGTGACTCTCAGCACCATTGACTCCAATGACACCGTTGTTGATGCAGCTGCTGCAGCTTTAGATTTGATAAAGGAAGAGGAAGTACAAGCCATAATAGGCCCAACAAGCTCCATGCAAGCCAACTTCATAATCAACATAGGAGACAAAGCACAAGTACCCATCATCTCCTACTCCGCCACACGCCCATCCCTCACATCCCAACGCAGCTCCTTCTTCTTCCGCATCGCCCAAAACGATTCCTCTCAAGTCAAAGCCATCGGAGCCATAATCAAAGCTTTCAAATGGCGTCAAGTCATCCCCATCTACACCGACAACGAGTTCGGCAACGGCATAATCCCTTACCTCATCGACGCACTACAAGAAGCCGACACAGACGTGCCTTACCAAAGCCTCATCTCCCCGACAGCCACCGACACCCAAATCACCAACGAGCTACACAAATTAAAAAACATGCCGACAAGAGTGTTCGTAGTACACATGTTAACACGCCACGCTTCAAGATTCTTCATGAAAGTTCAAGAATTTGGAATGATGAATCGTGGGTATGTTTGGATTATCACTGATTCAATTGCAAATGAATTGGATTTAATTGAGCCATTAGCTTATGAAGCTTTCCAAGGTGTTGTTGGAATTAGAACTTATGTCCCAAGAACCAAAAGGCTTAACTTGTTGAAACGTGATTGGCGGAAGAGATTCCGGCGGTATTACCCAACCGTGGAGGATATTCCGGAGGTGGACGTTTACGGGTTATGGGCTTATGATGCCGCTTGGGCTTTGGCCACCGCCGTGGAACTCGCCGGCACCGACAACCTCCGATACACCGCCGCCAAATTGAACTCATCGAATTATTTATTTAACGTTGGGGTTAATCAAAATGGTCCGAGGTTGCGTGAGGCCTTGTCGGATGTCACGTTCATGGGGTTGGCTGGTGAATTTAGTCTCATAAACGGGCAATTGCAATCGACCCTTTTTGAGATTGTGAATGTTATTGGTAATGGGAGGAGAAATGTGGGATTTTGGTCGCCGGAGACTGGGTTGACGAGGAAGCTGGTTGATTCCGGCGGTGCGAAGGGGTTGCGGTCGATTATTTGGCCGGGGGAGCCGATTGTTACGCCGAAAGGGTGGGAGATTCCGACGAATGGGAAGAAGTTGAGAATTGGGGTTCCGGTGAAGGATGGATTTTGGGAGTTTGTGAAGCTGGTAAGAGATTTTGAAACGAATGTAACGATTGGTGTTGAAGGATATTGCATTGATGTGTTTAAGGCTGTGATTGAGAAGCTGCCTTATAAGGTTGATTATGAGTTTGTTCCTGCTGAGAAATCTAATTCTATCCCTGGTGGTAGCTACAATGAGTTCACTTATCAGCTCTTCCTTGGGAAATTCGACGCTGTGGTGGGCGACATAACGATCCGGGCGAACAGGTCAACATACATAGACTACACATTACCATTCACAGCATCCGGAGTGGCCATGGTGGTGCCAATGAAGACCGAGAAGAACACCAATGCATGGGTGTTCTTAAAGCCACTAACATGGAAGCTATGGGCGCTCACAGCCGGCTTCTTCCTCTTCATAGCACTTGTTGTTTGGATCCTAGAACATAGAGTCAATGAAGAGTTCCGTGGATCTTCATTGGATCAAATCTGCACCAGCCTCTGGTACTCATTTTCAACCATGGTTTTTGCTCATAGGGAGGTTACTTTGAACAATTGCACAAGACTTGTGGTGATACTATGGCTGTTTGTGGTTCTTATCATCACTCAAAGCTATACTGCAAGTTTGGCATCACTTTTGACAGTTCAAGAGCTGAAGCCCAGTGTGAATGATATCAATTTGCTTCTTAAAAATGGAGAGAACATTGGGTACCAAGGAGGGTCTTTTGTGTATGAAATTCTTAAGTCCTTGAAGTTTGATGATTCTCAGCTTAAAACTTATGAGTCTGCTGAAGAACTGCATGAACTTTTCGTTAAAGGAAGTATAAATGGTGGAATTTCTGCTGCGGTGGATGAAACTCCTTATATTAAAGTGTTTCTGGGTCAGTATTGCTCTCAATATACCACCACTGAACCCACCTTTAAAGCTGATGGCTTTGGCTTTGGATTTCCGATAGGTTCGCCTTTAGTACCGGATATCTCGAGAAAAATCTTGGAGGTGACGGAAGGCGAACGAATGAAAGAGATCGAAACCAAATGGTTCAAAAATGTGGAAGAATGTACAGCTTCAAAAGTGGCAGAATTATCTTCCACCCGCTTGAGCATCAACAGCTTCTGGGGACTTTTCCTCGTCACCGGCGTCGTTTCCCTCTCCTCCGTCGTTGCTTATATCGGCAAATTTCTCTACGACGAACAGCGCGTGTGGCAAAACAACGTCGAGCCTTCGATCTGGAGAGTATTCTGCGCGTTGACCCGCAAGTTCATGAAGAGAGATCCAACAGCTCACCCGCTAAGGCGAAGGGCATCCATGAATGATGTTCCTGTCTTAGCCAGAAGACGCAGTTTTTAG 2679 46.29 MLVTVATTEMAAEEEAAGKVKVKVGVVLDLNLVVGQMGLSCVSMALADLYSSRSYYKTRVTLSTIDSNDTVVDAAAAALDLIKEEEVQAIIGPTSSMQANFIINIGDKAQVPIISYSATRPSLTSQRSSFFFRIAQNDSSQVKAIGAIIKAFKWRQVIPIYTDNEFGNGIIPYLIDALQEADTDVPYQSLISPTATDTQITNELHKLKNMPTRVFVVHMLTRHASRFFMKVQEFGMMNRGYVWIITDSIANELDLIEPLAYEAFQGVVGIRTYVPRTKRLNLLKRDWRKRFRRYYPTVEDIPEVDVYGLWAYDAAWALATAVELAGTDNLRYTAAKLNSSNYLFNVGVNQNGPRLREALSDVTFMGLAGEFSLINGQLQSTLFEIVNVIGNGRRNVGFWSPETGLTRKLVDSGGAKGLRSIIWPGEPIVTPKGWEIPTNGKKLRIGVPVKDGFWEFVKLVRDFETNVTIGVEGYCIDVFKAVIEKLPYKVDYEFVPAEKSNSIPGGSYNEFTYQLFLGKFDAVVGDITIRANRSTYIDYTLPFTASGVAMVVPMKTEKNTNAWVFLKPLTWKLWALTAGFFLFIALVVWILEHRVNEEFRGSSLDQICTSLWYSFSTMVFAHREVTLNNCTRLVVILWLFVVLIITQSYTASLASLLTVQELKPSVNDINLLLKNGENIGYQGGSFVYEILKSLKFDDSQLKTYESAEELHELFVKGSINGGISAAVDETPYIKVFLGQYCSQYTTTEPTFKADGFGFGFPIGSPLVPDISRKILEVTEGERMKEIETKWFKNVEECTASKVAELSSTRLSINSFWGLFLVTGVVSLSSVVAYIGKFLYDEQRVWQNNVEPSIWRVFCALTRKFMKRDPTAHPLRRRASMNDVPVLARRRSF 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1962550 1968383 + CmaCh12G003810.1 Cma12g00381 304871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00381 892 Gene3D - 338 442 - -
Cma12g00381 892 Pfam Bacterial extracellular solute-binding proteins, family 3 471 792 IPR001638 -
Cma12g00381 892 Gene3D - 147 290 - -
Cma12g00381 892 Pfam Receptor family ligand binding region 41 390 IPR001828 -
Cma12g00381 892 SUPERFAMILY Periplasmic binding protein-like I 21 425 IPR028082 -
Cma12g00381 892 CDD PBP1_GABAb_receptor_plant 28 409 IPR044440 -
Cma12g00381 892 Gene3D - 443 560 - -
Cma12g00381 892 SUPERFAMILY Periplasmic binding protein-like II 420 792 - -
Cma12g00381 892 Gene3D - 561 696 - -
Cma12g00381 892 Gene3D - 6 337 - -
Cma12g00381 892 CDD GluR_Plant 441 791 - -
Cma12g00381 892 PIRSF IGluLR_plant 1 891 IPR017103 -
Cma12g00381 892 Gene3D - 739 799 - -
Cma12g00381 892 Pfam Ligand-gated ion channel 793 824 IPR001320 GO:0015276|GO:0016020
Cma12g00381 892 SMART GluR_14 442 793 IPR001320 GO:0015276|GO:0016020
Cma12g00381 892 PANTHER GLUTAMATE RECEPTOR 2.9 22 862 - -
Cma12g00381 892 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 862 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00381 K05387 GRIP; glutamate receptor, ionotropic, plant - csv:101203794 1282.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00418 Cma-Chr11:2055789 Cma12g00381 Cma-Chr12:1962550 0 dispersed
Cma12g00381 Cma-Chr12:1962550 Cma12g00660 Cma-Chr12:3530829 0 dispersed
Cma12g00380 Cma-Chr12:1953960 Cma12g00381 Cma-Chr12:1962550 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00381 Cma_Chr12 FPKM 3.926812 5.202035 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0