Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00384 ATGAGTCTTCATCTTCTTCCTCAGCATCGCGCCCTCTTCAATTCACTCTTACGGTACACAAGTCACAAAGATTTTCAGAAGGGCAAGGCCATCCACGCTCATCTTCTCAGAATTGGTTCAATCTCCTCAGTTTACCTTTCTAACAGCCTTGTTAACTTGTATGCTAAATGCGGAAGCCTTGTGAAGGCCAAGCTTGTCTTCGACAGTATAACCAACAAAGACGTGGTTTCATGGAATTCTTTAATCAATGCCTACTCTCAACAGGGTCCCGTTGGATCTTCGTTTGTAATGGAGCTTTTTCAGAGAATGAGGGCGGAGAACACTCTGCCCAATGCCCATACTTTTGCTGGGGTTTTCACGGCTGCTTCAAGTTTATTCGAAACTTTAGGTGGCTTACAGGCCCATGCGCTAGCTATCAAGACTTGTAGCTTTTATGATGTTTTTGTTGGCAGTTCGCTTCTTAATATGTATTGCAAAATTGGGTGTTTACTGGATGCTCGTAAGGTGTTCGACAGAATGCCGGAGAGAAATTCTGTTTCGTGGGCTACTATGATTTCGGGGTATGCAATGCAAAGGAAGGCGTTTGAGGCTTGGGAATTGTTTTTATTAATGTGCCGTGAAGAGGGAATTCATAATGAGTTTATCTATACCAGTGTGCTTAGTGGACTGACGGTTCATGAACTTGTTGGCTCTGGTAAGCAAATTCATTGTCTTGCCCTTAAAAATGGATTGTTATCGATTGTTTCTGTAGGGAACGCTCTTGTTACAATGTATGCTAAATGTGGGTGCTTAGATGATGCACTTAAAACATTCGAATTGTCTGGTGATAAGAACTCCATTACATGGTCAGCTATGATAACTGGCTATGCACAAGCTGGGAACTCGCATGAGGCTTTGAAGTTGTTTTCTAATATGCATTTTAATGGGAATAAGCCTAGTGAGTTTACTTTTGTTGGGGTGATCAATGCTTGTAGTGACTTGGGTGCTCTGGGAGAAGGGAAACAAATGCATGGTTATTCCTTGAAGATGGGACATGAATCCCAAATCTATATAATGACAGCTTTAGTTGATATGTATGCTAAATCTGGAAGCCTAGTTGATGCACGAAAGGGGTTCGATTACTTAAAAGAACCGGACATTGTTTTGTGGACGTCCATGATTGGAGGATATGTTCAAAATGGTGAAAATGAAACTGCTTTGACTCTGTATTGTAGAATGCAAATGGAAGGGATTATGCCAAATGAGTTAACCATGGCTAGTGTCTTGAGAGCATGTTCAAGCCTTGCTGCTTTAGAACAAGGTAAGCAAATCCATGCCCGTACAATTAAGTATGGATTCAATCTAGAAGTTCCAATAGGGAGTGCACTTTCAACCATGTATGCAAAGTGTGGTAGTTTAGAAGATGGGAACCTGGTGTTTAGGAGGATGCCAACTAGAGATATTGTGTCATGGAATGCAATGATATCCGGTCTTTCTCAAAACGGAGAGGGTCTTAAGGCCCTTGAACTCTTCGAAGAGATGCGACAAGGCCCGACAAAACCCGACTACGTTACTTTCGTGAACATTCTTTCTGCATGCAGCCACATGGGATTGGTGGAAAGAGGTAAGGTCTATTTCAAGATGATGCTTGGTGAGTTCGGCATCGTTCCAAGAGTCGAGCATTATGCTTGCATGGTAGACATTCTAAGCCGTGCTGGTAAGCTACTGGAAGCGAAAGAGTTCATAGAATCTGCGACAATTGATCACGGTATGTATCTATGGCGTATCTTGCTAGGAGCGTGCCGAAACTATCGAAATTATGAATTAGGAGCGTATGCAGGTGAGAAACTAATGGAGTTAGGTTCAGAAGAATCGTCCGCTTATGTGTTATTATCTAGTATCTATGCTGCATTGGGAAGGTCTGATGATGTCGAACGGGTGAGACGGGCGATGAAACTTCGAGGGGTGAATAAGGATCCAGGTTGTAGTTGGATTGAATTGAAAAGTCAAGTTCATGTGTTTGTAGTTGGCGACCAGATACATCCAGAGATTGTTAATATACGTGTAGAGTTGAGAAGATTGAGCAAACATATGAAGGATGAGCGTTCTGAATCGCCAGATGATATAGATTCTATGACATTACCAGCTCAATGA 2133 42.24 MSLHLLPQHRALFNSLLRYTSHKDFQKGKAIHAHLLRIGSISSVYLSNSLVNLYAKCGSLVKAKLVFDSITNKDVVSWNSLINAYSQQGPVGSSFVMELFQRMRAENTLPNAHTFAGVFTAASSLFETLGGLQAHALAIKTCSFYDVFVGSSLLNMYCKIGCLLDARKVFDRMPERNSVSWATMISGYAMQRKAFEAWELFLLMCREEGIHNEFIYTSVLSGLTVHELVGSGKQIHCLALKNGLLSIVSVGNALVTMYAKCGCLDDALKTFELSGDKNSITWSAMITGYAQAGNSHEALKLFSNMHFNGNKPSEFTFVGVINACSDLGALGEGKQMHGYSLKMGHESQIYIMTALVDMYAKSGSLVDARKGFDYLKEPDIVLWTSMIGGYVQNGENETALTLYCRMQMEGIMPNELTMASVLRACSSLAALEQGKQIHARTIKYGFNLEVPIGSALSTMYAKCGSLEDGNLVFRRMPTRDIVSWNAMISGLSQNGEGLKALELFEEMRQGPTKPDYVTFVNILSACSHMGLVERGKVYFKMMLGEFGIVPRVEHYACMVDILSRAGKLLEAKEFIESATIDHGMYLWRILLGACRNYRNYELGAYAGEKLMELGSEESSAYVLLSSIYAALGRSDDVERVRRAMKLRGVNKDPGCSWIELKSQVHVFVVGDQIHPEIVNIRVELRRLSKHMKDERSESPDDIDSMTLPAQ 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1985504 1987636 + CmaCh12G003840.1 Cma12g00384 304874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00384 710 MobiDBLite consensus disorder prediction 690 710 - -
Cma12g00384 710 Pfam PPR repeat family 480 527 IPR002885 -
Cma12g00384 710 Pfam PPR repeat family 277 324 IPR002885 -
Cma12g00384 710 Pfam PPR repeat family 378 426 IPR002885 -
Cma12g00384 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Cma12g00384 710 Pfam E motif 597 659 IPR046848 -
Cma12g00384 710 Gene3D Tetratricopeptide repeat domain 235 335 IPR011990 GO:0005515
Cma12g00384 710 Gene3D Tetratricopeptide repeat domain 125 234 IPR011990 GO:0005515
Cma12g00384 710 Gene3D Tetratricopeptide repeat domain 336 439 IPR011990 GO:0005515
Cma12g00384 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 110 IPR002885 -
Cma12g00384 710 PANTHER - 404 694 - -
Cma12g00384 710 PANTHER - 13 293 - -
Cma12g00384 710 PANTHER - 296 427 - -
Cma12g00384 710 PANTHER - 229 328 - -
Cma12g00384 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cma12g00384 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Cma12g00384 710 Pfam PPR repeat 179 207 IPR002885 -
Cma12g00384 710 Pfam PPR repeat 252 272 IPR002885 -
Cma12g00384 710 Pfam PPR repeat 76 103 IPR002885 -
Cma12g00384 710 Pfam PPR repeat 48 73 IPR002885 -
Cma12g00384 710 Pfam PPR repeat 151 177 IPR002885 -
Cma12g00384 710 PANTHER BNACNNG15330D PROTEIN 229 328 - -
Cma12g00384 710 PANTHER BNACNNG15330D PROTEIN 296 427 - -
Cma12g00384 710 PANTHER BNACNNG15330D PROTEIN 404 694 - -
Cma12g00384 710 PANTHER BNACNNG15330D PROTEIN 13 293 - -
Cma12g00384 710 Gene3D Tetratricopeptide repeat domain 3 124 IPR011990 GO:0005515
Cma12g00384 710 Gene3D Tetratricopeptide repeat domain 458 676 IPR011990 GO:0005515
Cma12g00384 710 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Cma12g00384 710 TIGRFAM PPR: pentatricopeptide repeat domain 152 177 IPR002885 -
Cma12g00384 710 TIGRFAM PPR: pentatricopeptide repeat domain 482 509 IPR002885 -
Cma12g00384 710 TIGRFAM PPR: pentatricopeptide repeat domain 179 210 IPR002885 -
Cma12g00384 710 TIGRFAM PPR: pentatricopeptide repeat domain 381 415 IPR002885 -
Cma12g00384 710 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00384 - - - csv:101213039 1204.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00384 Cma-Chr12:1985504 Cma17g01185 Cma-Chr17:8199730 1.37E-34 dispersed
Cma12g00384 Cma-Chr12:1985504 Cma08g00341 Cma-Chr8:1951266 2.63E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1172 . . . . Bpe02g00620 . . Bma01g02099 . Cmo15g00648 . . . . . . . . . . . . . . Cla08g00647 . . . . . . Cone4ag1444 . . . . . . . . . . . . . . . . . . Cma12g00384 . . Car15g00587 Cpe11g00286 . . . . . . . . . . . . . . . Lsi08g01280 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012001 0 2 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 0 2 1 1 0 0 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00384 Cma_Chr12 FPKM 0.950305 1.029993 1.10272 0.731924 3.041657 2.582754 2.661906 0.997328 0.845538 1.394829