Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00389 ATGCCTTTACTCCACTTCACAATAGCAGTCAAGCTTTTCCTTTGTCTTCAACTAGCTAGTTCTACTATAAACATTCCTCCCGGTTACTCCGTCCCCGCGGTTTTCGTGTTCGGGGACTCGATTGTCGATACAGGCAACAATAACAATCTCATCACTCAAGCTAAGTGCAACTATCCGCCATACGGTAGGGATTTTCTCGGTCAACAGGCAACCGGGCGATTTTCCAATGGCAGAGTTCCCTCTGACCTTCTAGTTGATGCGTTGGGTATCAAAGAGTTTTTACCACCGTATGCTAACTTGAGTCTACGGCCCAAAGACCTAATTACGGGTGTCAATTTTGCTTCTGGTGGTGCTGGATTTGATCCTCTGACCTCTCAATTAGCGCCAGCAATATCACTTGAAGAGCAATTAGGCATGTTTATAGAATACTCAAAGAAGCTAGAAGAAGTGGTTGGAGTAGCGAGAGCAAAGTTCATAATAGCCAATGGCTTGTTCATGGTGGCGGCGGGAAGCAACGACATTGCTAACACATTTTATCTTGCAAAAATAAGGCAAATTCAATTCAATATCGATTCGTACACTGATTTCATGGCTCGGTATGCTTCCGCTTTTGCAGAGGGATTGTACGCAGCCGGTGGGCGGAGAATCGGATTCTTCGGGGCACCGCCGTTGGGGTGTGTGCCGTCGCAAAGAACCTTGGCCGGCGGGATTGAAAGGGTGTGCGTAAATGAGTACAACGCTGCTGCAGAGCTCTTCAATGGAAAATTGCACACCGCTTTGGATCAACTTCAAACTTCACTGCCTAACAGCAAACTAGTTTACGTGGATATTTACCATCCTCTCCTTGATATCATCCAAAACTATCGTAAATATGGGTTTGAAGTTGCAGATAGAGGGTGTTGTGGAAGTGGGAAGATCGAGGTGACGTTTCTTTGTAACAAATTTGTGAAGACCTGCAACGATCCCAACAAGTTCGTGTTTTGGGATAGTTTTCATCCAACCGAAGCTACATACAGCTACCTCGTCGCTCCGATCATTCAAAAATATATTTCTAATTTCCTATAA 1065 45.07 MPLLHFTIAVKLFLCLQLASSTINIPPGYSVPAVFVFGDSIVDTGNNNNLITQAKCNYPPYGRDFLGQQATGRFSNGRVPSDLLVDALGIKEFLPPYANLSLRPKDLITGVNFASGGAGFDPLTSQLAPAISLEEQLGMFIEYSKKLEEVVGVARAKFIIANGLFMVAAGSNDIANTFYLAKIRQIQFNIDSYTDFMARYASAFAEGLYAAGGRRIGFFGAPPLGCVPSQRTLAGGIERVCVNEYNAAAELFNGKLHTALDQLQTSLPNSKLVYVDIYHPLLDIIQNYRKYGFEVADRGCCGSGKIEVTFLCNKFVKTCNDPNKFVFWDSFHPTEATYSYLVAPIIQKYISNFL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2010444 2012883 + CmaCh12G003890.1 Cma12g00389 304879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00389 354 Gene3D SGNH hydrolase 28 350 IPR036514 -
Cma12g00389 354 CDD SGNH_plant_lipase_like 32 349 IPR035669 -
Cma12g00389 354 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 34 45 IPR008265 GO:0006629|GO:0016298
Cma12g00389 354 PANTHER GDSL ESTERASE/LIPASE EXL3 12 351 - -
Cma12g00389 354 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 12 351 - -
Cma12g00389 354 Pfam GDSL-like Lipase/Acylhydrolase 34 342 IPR001087 GO:0016788
Cma12g00389 354 SUPERFAMILY SGNH hydrolase 33 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00389 - - - cmax:111496255 714.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00411 Cma-Chr7:1780912 Cma12g00389 Cma-Chr12:2010444 1.07E-116 dispersed
Cma12g00389 Cma-Chr12:2010444 Cma02g00722 Cma-Chr2:4363044 2.45E-47 dispersed
Cma20g00319 Cma-Chr20:1575692 Cma12g00389 Cma-Chr12:2010444 4.87E-65 dispersed
Cma12g00389 Cma-Chr12:2010444 Cma05g00324 Cma-Chr5:1401541 6.46E-170 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1160 . . . . Bpe02g00337 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00389 . . . Cpe11g00272 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001408 2 2 3 2 2 2 3 1 2 2 1 3 2 2 2 2 2 5 3 1 2 4 4 2 3 1 2 2 2 7 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00389 Cma_Chr12 FPKM 0.0 0.0 0.812558 0.987429 11.937657 11.629969 12.386271 0.0 0.0 0.0