Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00394 ATGTCTCTCTTCTTCACCTTTCTTCTCCTCTTTTCTTCCCTCCTTCCGTCTCTCAATGCCTTGACCTACCGCTATTACGACCACACGTGCCCTAATCTCGAGTCCATCATCGCCCGAGAAGTCCACCTAGCCACCGTCAACGACAAGACAGTTCCTGCTGCGCTACTCCGAATGCACTTCCATGACTGTTTCATTAGAGGTTGTGATGGGTCTGTGCTTCTCGACTCCAAGGGGAAGAACAAGGCGGAAAAAGACGGCCCTCCTAATATATCGTTACATGCTTTTTACGTCATTGATAAGGCTAAGAAAGCTATTGAATCTGCTTGCCCTGGTGTTGTTTCTTGTGCTGATATCCTAGCTCTCGCTGCTCGAGATGCTGTTGTTGTGTCGGGAGGTCCTCATTGGGAAGTTCCGAAAGGAAGAAAAGACGGAAGAATCTCGAAAGCAAATGAAACCATACAATTGCCTTTTCCCACATTCAACTTCTCCCAACTCCAACAAAGCTTCTCTCAACGAGGTCTTTCCATACAAGATCTCGTAGCTCTATCAGGCGGACACACGTTAGGATTTGCCCATTGCTCATCATTCCAAAACCGAATCCACAATTTCAACTCGACCGTCGACATCGACCCGTTGTTGCAGCCATCATTCGCCGCCAGTCTCCAGAGCATATGTCCAGCTCACAACAAGGTGAAGAACGCCGGCTCCCCTATGGATTCAACTACCACGGTGTTTGACAATGCATACTTCAAGCTGCTTCTTCAAGGGCGGAGCATTTTTTCTTCCGATCAATCTTTGCTTTCAACTCCGTATTCAAAGGCTTTGGTTTCTAAATTCGCCAATGAACAACGCCACTTTGAGAAGGCGTTTGTGAAGTCCATGGTCAAGATGAGTCGGATCGCCGGCGCCGGCGAAGAAGTCCGGCTAAACTGCCGGGTGGTCAGATAA 948 48.42 MSLFFTFLLLFSSLLPSLNALTYRYYDHTCPNLESIIAREVHLATVNDKTVPAALLRMHFHDCFIRGCDGSVLLDSKGKNKAEKDGPPNISLHAFYVIDKAKKAIESACPGVVSCADILALAARDAVVVSGGPHWEVPKGRKDGRISKANETIQLPFPTFNFSQLQQSFSQRGLSIQDLVALSGGHTLGFAHCSSFQNRIHNFNSTVDIDPLLQPSFAASLQSICPAHNKVKNAGSPMDSTTTVFDNAYFKLLLQGRSIFSSDQSLLSTPYSKALVSKFANEQRHFEKAFVKSMVKMSRIAGAGEEVRLNCRVVR 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2033702 2035015 - CmaCh12G003940.1 Cma12g00394 304884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00394 315 PANTHER PEROXIDASE 5 314 - -
Cma12g00394 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 178 188 IPR019793 -
Cma12g00394 315 CDD secretory_peroxidase 21 314 IPR033905 GO:0004601|GO:0042744
Cma12g00394 315 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Haem peroxidase superfamily signature 113 130 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Haem peroxidase superfamily signature 131 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Haem peroxidase superfamily signature 178 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 Gene3D Peroxidase, domain 2 156 297 - -
Cma12g00394 315 PANTHER PEROXIDASE 25-RELATED 5 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 Pfam Peroxidase 43 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 SUPERFAMILY Heme-dependent peroxidases 21 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 93 106 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 112 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 131 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 177 189 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma12g00394 315 Gene3D - 24 314 - -
Cma12g00394 315 ProSiteProfiles Plant heme peroxidase family profile. 20 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00394 Cma-Chr12:2033702 Cma20g00633 Cma-Chr20:2948709 1.36E-89 dispersed
Cma03g00004 Cma-Chr3:113766 Cma12g00394 Cma-Chr12:2033702 7.54E-91 transposed
Cma18g01214 Cma-Chr18:9599503 Cma12g00394 Cma-Chr12:2033702 3.03E-124 transposed
Cma12g00394 Cma-Chr12:2033702 Cma03g00661 Cma-Chr3:5545692 3.80E-148 wgd
Cma12g00394 Cma-Chr12:2033702 Cma07g00408 Cma-Chr7:1767659 2.65E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00394 K00430 - csv:101214403 533.487