Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00395 ATGGCCAAACTTCCTTTCGCATTCGCTTTCTCTCTCGTTCTCTGCAACTTCCTCTCTGCTGCCGATGCTTTCACCGCGTCGGGTTGGTATCCCGCTCATGCTACGTTCTATGGCGGTAGCGATGCATCGGGGACAATGGGAGGAGCTTGTGGGTATGGGAACTTGTACGACACCGGTTACGGGACTAGCACGGCAGCGCTAAGCACCGCGCTGTTTAACGACGGAGCATCCTGCGGGCAGTGCATCAAGATCACGTGCGATTACAAGACCGATCCCCGTTGGTGCGTGAAAGGGGCGTCGGTGACCGTAACAGCCACCAATTTCTGCCCACCAAACTTCGCTCTCCCCAACAACAACGGCGGATGGTGCAACCCTCCGCTTAAGCACTTCGACATGGCCCAACCCGCTTGGGAAAAGATCGGCATTTACCGAGGCGGAATCATCCCCGTCCTCTACCAAAGAGTTCCTTGTGTAAAGAAAGGAGGGGTGAGATTCACTGTGAATGGACGAGACTATTTTGAGCTGGTTTTGATAAGCAACGTGGGAGGAGCTGGAGACATCCAAGCGGTGTCGATCAAGGGCTCGAAATCAAGCCAATGGATGGCGATGTCGAGGAATTGGGGCATGAATTGGCAGTCAAATTCGTATCTAAATGGGCAAGCTCTGTCGTTCAAGGTGACCACGACCGACGGGCAGACACAAGTGTTCAACAACGTTGTCCCTTCGAGCTGGAGGTTTGGGCAAACGTTTGGGAGCAGTGTCCAATTCAGCTGA 774 53.88 MAKLPFAFAFSLVLCNFLSAADAFTASGWYPAHATFYGGSDASGTMGGACGYGNLYDTGYGTSTAALSTALFNDGASCGQCIKITCDYKTDPRWCVKGASVTVTATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLYQRVPCVKKGGVRFTVNGRDYFELVLISNVGGAGDIQAVSIKGSKSSQWMAMSRNWGMNWQSNSYLNGQALSFKVTTTDGQTQVFNNVVPSSWRFGQTFGSSVQFS 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2036429 2038859 - CmaCh12G003950.1 Cma12g00395 304885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00395 257 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Cma12g00395 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Cma12g00395 257 Pfam Lytic transglycolase 64 152 IPR009009 -
Cma12g00395 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Cma12g00395 257 SMART dpbb_1 64 152 IPR007112 -
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Cma12g00395 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Cma12g00395 257 PANTHER EXPANSIN 7 256 - -
Cma12g00395 257 PANTHER EXPANSIN-A15 7 256 IPR002963 GO:0009664
Cma12g00395 257 SUPERFAMILY Barwin-like endoglucanases 16 180 IPR036908 -
Cma12g00395 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Cma12g00395 257 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Cma12g00395 257 Gene3D - 162 257 IPR036749 -
Cma12g00395 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Cma12g00395 257 Gene3D - 16 157 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00395 Cma-Chr12:2036429 Cma04g01668 Cma-Chr4:8389926 1.72E-121 dispersed
Cma12g00395 Cma-Chr12:2036429 Cma05g00323 Cma-Chr5:1398559 9.48E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00395 - - csv:101216569 480.715