Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00397 ATGAGGAGGATTAATGGAGTTCGCGTACTCAGCCGGATTGTAAGCGGTGAGGCCAACACCGCCACTGTCACCGCTGATCGGCGGCTACTCCATCCATCGGCGGTTCACAGAACGTCCATTGGATCTGATATTCGGTGTTTCTCGCAAGGAAAGAACCCATTTGGCTTGTATTGTCCTTCTTTTGTTCGGAATGTTGCAGGGAATGGTCGGTGCTTCTCTGTGGCCTCTTCATCTTCGGTTCATGATGTGGTTAATGACCTACCTCGTTTGTCGTTCGCACCCAAGGATGTGGTTCTCTATCAATACGAGGCTTGCCCATTCTGCAACAAAGTTAAAGCATTCTTGGATTACTACAATGTTCCTTATAAAGTTGTGGAGGTGAATCCCATATTCAAAAAGGAGATTAAGTGGTCTGAATACAAGAAGGTTCCAATTCTGATGGTTGATGGTGTTCAAATGGTGGATTCTACAGATATAATTGATAAGTTGTACAAAAGAATTCATCCAGAGAATTCTACCTCGGACTCAGAGGAGGAGAGGAAGTGGCTTGGATGGGTGGACAATCACCTGGTGCACGTTTTATCCCCAAACATTTACAGAAATTACAAGGAGGCTCTCGAGTCTTTCAACTACATAACTACACATGGAAATTTTAGTTTCACTCAAAGGATAATAGCTAAGTATGGTGGGGCTACAGCCATGTATTTTGTTTCCAAGAAATTGAAAGAAAAACATAACATCGTTGATGAACGAAAAGCCTTATATGGAGCTGCAGAAACATGGGTGGAAGCACTGAAAGACCGTCAGTTTCTTGGTGGACCAAATCCTAATTTAGCTGATCTTGCCGTCTTTGGCGTCTTGAGACCAATCCGACACCTTCAATCTGGAATAGATATGGTAGAGAATACAAGAGTTGGCGAATGGTATTCTAGAATGGAGGATGCTGTGGGAGAGTCTGCAAGGATCGTCTCTTGA 975 43.79 MRRINGVRVLSRIVSGEANTATVTADRRLLHPSAVHRTSIGSDIRCFSQGKNPFGLYCPSFVRNVAGNGRCFSVASSSSVHDVVNDLPRLSFAPKDVVLYQYEACPFCNKVKAFLDYYNVPYKVVEVNPIFKKEIKWSEYKKVPILMVDGVQMVDSTDIIDKLYKRIHPENSTSDSEEERKWLGWVDNHLVHVLSPNIYRNYKEALESFNYITTHGNFSFTQRIIAKYGGATAMYFVSKKLKEKHNIVDERKALYGAAETWVEALKDRQFLGGPNPNLADLAVFGVLRPIRHLQSGIDMVENTRVGEWYSRMEDAVGESARIVS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2050309 2052782 - CmaCh12G003970.1 Cma12g00397 304887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00397 324 Gene3D - 172 322 - -
Cma12g00397 324 SUPERFAMILY Thioredoxin-like 96 190 IPR036249 -
Cma12g00397 324 SFLD Prostaglandin E synthase like.1 87 321 IPR034334 GO:0050220
Cma12g00397 324 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 322 - -
Cma12g00397 324 ProSitePatterns Glutaredoxin active site. 99 115 IPR011767 -
Cma12g00397 324 Pfam Glutathione S-transferase, N-terminal domain 99 166 IPR004045 -
Cma12g00397 324 SUPERFAMILY GST C-terminal domain-like 165 316 IPR036282 -
Cma12g00397 324 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 95 171 IPR004045 -
Cma12g00397 324 SFLD Glutathione Transferase (cytosolic) 87 321 IPR040079 -
Cma12g00397 324 CDD GST_C_mPGES2 176 318 IPR034335 -
Cma12g00397 324 Gene3D Glutaredoxin 90 168 - -
Cma12g00397 324 ProSiteProfiles Glutaredoxin domain profile. 85 182 - -
Cma12g00397 324 PANTHER GLUTATHIONE S-TRANSFERASE FAMILY PROTEIN 1 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00397 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - csv:101215364 531.946
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00320 Cma12g00397 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00331 Cma-Chr10:1525204 Cma12g00397 Cma-Chr12:2050309 1.22E-126 dispersed
Cma11g00316 Cma-Chr11:1574541 Cma12g00397 Cma-Chr12:2050309 1.17E-47 dispersed
Cma12g00397 Cma-Chr12:2050309 Cma05g00320 Cma-Chr5:1387024 6.05E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1151 . . . . . . . . Cmo05g00323 Cmo12g00348 . . . Car12g00375 Sed08g0406 . Cpe07g00352 Bhi04g00121 Tan02g2832 Cmetu03g2049 . Hepe10g0170 . Lcy13g1896 Cla08g01407 Cam08g1887 Cec08g1464 Cco08g1597 Clacu08g1579 . Cre08g1362 . . . . . . . . . . Bda08g01209 . . Bpe05g00149 . Bma05g00181 . . . Cma12g00397 Cma05g00320 Car05g00267 . Cpe11g00268 . . . . . . . . . . . . . . . Lsi08g01303 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00397 Cma_Chr12 FPKM 5.704052 6.204159 7.519166 8.226942 10.623603 8.812989 11.210071 22.48555 23.033298 24.354065