Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00400 ATGGGGTTGCTTAGTAGTGTAATGGGTTTCTTTGGATTTGGCTTGGGAACTTCGATTGGGCTTGTGGCTGGATATTATATGTTCATCTATTTTCAGCCGTCCGATGTCAAGGATCCGATCGTTCGCCCTTTGGTCGAACAAGATTCAAGCTCATTGTCACGGATGATGCCAGAAATCCCTCTATGGGTGAAAAATCCCGATTACGATCGCATTGACTGGCTCAACAAATTCCTTGAAACTATGTGGCCTTACTTAGACAAGGCTATATGCAAGACAGTGAAGAACATAGCAAAGCCTATCATTGCAGAACAAATTCCAAAGTACAAAATCGACGCCGTTGATTTCGACACGCTTACGTTGGGCTCTCTACCACCCACGTTTCAAGGAATGAAAGTTTATACGACCGACGATAAAGAGCTGATCATGGAACCATGTATGAAGTGGGCAGGAAACCCGAACATTACTGTTTCAGTGAAAGCGTTCGGATTGAAAGCAACAGTTCAGGTGATTGATTTGCAAGTATTTGTCGTTCCACGTATAACCTTGAAGCCTTTGGTCCCGACATTTCCTTGCTTCGCGAAAATATTTGTGTCTCTCATGGAGAAGCCCCATGTCGATTTTGGACTGAAATTGTTCGGTGCAGACACGATGGCCATCCCGGGGCTGTATAGGTTTGTTCAGGAAACTATAAAAGACCAAGTCGCGAATATGTATCTATGGCCGAAGACCCTCGAGGTGCCGATAATGGATCCAGTGAAAGCCATGAAGAAACCTGTTGGCATCCTTCATGTGAAGGTTTTAAAGGCATTGAAGCTTAAAAAGAAAGATCTATTTGGGGCATCTGATCCTTATTTAAAACTGAAGCTCACTGAAGACAAGCTTCCTTCCAAGAAAACGACCGTGAAACCGAGTAATTTGAACCCGGAATGGAACGAGGAGTTTACGTTCGTTGTGAAAGATCCCGAGTCACAAGCTTTAGAACTGGTTCTTTACGATTGGGAGAAGGTTGGCAAGCATGATAAGATGGGGATGAACGTTGTTCCATTGAAAGAACTTACACCCGACGAGTCGAAGGAGTTTACTCTCGAGGTATTGAAAAATATGGATCCTAACGATACACAAAACGAGAAGTCGAGAGGGCAGCTTGTCGTGGAATTGTTGTACAAACCTTTTAAAGACGATGAAGCTCCAAAAGATGTCGAGTACGAGAATGCAGTACAAAAGGCTCCTGATGGAACGCCGGAAGGCGGTGGTTTGCTGGTCGTTATGATCCATCAAGCTGAAGATGTCGAAGGGAAGCATCATACGAACCCCTATGTTCGGTTACTTTTCCGAGGAGAAGAGAAACGAACTAAGCATGTTAAGAAGAATCGGGATCCGAGATGGGACGAGGAGTTTCAGTTCATGCTCGAGGAGCCACCTGTGAACGATCGGATCCATGTCGAAGTACTGAGTGCATCTTCGAGGATAGGCCTGCTTCACCCGAAGGAAAGTTTGGGCTACGTGGACATAAACCTATCCGATGTCGTGTCGAACAAAAGGATTAACGCTAAGTATCATCTAATAGACTCGAAGAACGGTCGGGTCCAGATCGAGCTACAATGGAGAACTTCATCATAG 1620 44.94 MGLLSSVMGFFGFGLGTSIGLVAGYYMFIYFQPSDVKDPIVRPLVEQDSSSLSRMMPEIPLWVKNPDYDRIDWLNKFLETMWPYLDKAICKTVKNIAKPIIAEQIPKYKIDAVDFDTLTLGSLPPTFQGMKVYTTDDKELIMEPCMKWAGNPNITVSVKAFGLKATVQVIDLQVFVVPRITLKPLVPTFPCFAKIFVSLMEKPHVDFGLKLFGADTMAIPGLYRFVQETIKDQVANMYLWPKTLEVPIMDPVKAMKKPVGILHVKVLKALKLKKKDLFGASDPYLKLKLTEDKLPSKKTTVKPSNLNPEWNEEFTFVVKDPESQALELVLYDWEKVGKHDKMGMNVVPLKELTPDESKEFTLEVLKNMDPNDTQNEKSRGQLVVELLYKPFKDDEAPKDVEYENAVQKAPDGTPEGGGLLVVMIHQAEDVEGKHHTNPYVRLLFRGEEKRTKHVKKNRDPRWDEEFQFMLEEPPVNDRIHVEVLSASSRIGLLHPKESLGYVDINLSDVVSNKRINAKYHLIDSKNGRVQIELQWRTSS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2064885 2069512 + CmaCh12G004000.1 Cma12g00400 304890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00400 539 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 537 - -
Cma12g00400 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cma12g00400 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 368 IPR035892 -
Cma12g00400 539 Gene3D C2 domain 255 412 IPR035892 -
Cma12g00400 539 CDD C2 278 359 - -
Cma12g00400 539 Gene3D C2 domain 419 538 IPR035892 -
Cma12g00400 539 PRINTS C2 domain signature 277 289 IPR000008 -
Cma12g00400 539 PRINTS C2 domain signature 304 317 IPR000008 -
Cma12g00400 539 PRINTS C2 domain signature 326 334 IPR000008 -
Cma12g00400 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 537 IPR045050 GO:0008289
Cma12g00400 539 ProSiteProfiles C2 domain profile. 402 519 IPR000008 -
Cma12g00400 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 536 IPR035892 -
Cma12g00400 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Cma12g00400 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Cma12g00400 539 Pfam C2 domain 419 521 IPR000008 -
Cma12g00400 539 Pfam C2 domain 260 359 IPR000008 -
Cma12g00400 539 SMART C2_3c 419 518 IPR000008 -
Cma12g00400 539 SMART C2_3c 261 361 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00400 - - - csv:101203849 1004.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00400 Cma-Chr12:2064885 Cma20g00755 Cma-Chr20:3550894 0 dispersed
Cma12g00400 Cma-Chr12:2064885 Cma05g00316 Cma-Chr5:1367244 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00400 Cma_Chr12 FPKM 13.08529 13.705123 6.528425 6.993528 29.189873 28.086639 29.7015 3.368259 3.325873 3.172637