Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00402 ATGTTCGAAGACGACGGCGAGGCGATCAATCGTAATCGGAAGATGGAGAACGGCAGTCCAGTGCAGTGTCCGAACACGGTGACGGTTCGGAGAAACCCTCCCCGGAGAGCAAGAGCTACTCCGGCCGCCAAAGCAGCCGAATCGAATCCTCCAGCCGCCATTTCTTCATTTCCACTTCAAGAAATTCTTGCGATGGAAGTCCCTCAAAACCCTAAGGACAATTCCTCATCGTCGTCATCGTCCGTTCAAACTCCTCTCTCTGAAAACCTAAAAGTATACCTCAGAGTTCGACCTTTGCAGCTGAAGAATTTGAAGAAATCCAGAAATGCTGATGATCAAAACTCGAGGTCTGGACATGTATGGCCGCAGAACCCTCAGAAGAAGAAAGTGACGAAGGAAAAGAACGTTAAGAAGAAGGGCTGTGATGCTTGTGTAACGATTAATGATGATCACTCAGTAACAGTCTGTCCGCCCATGACTTTGCAAGAGTCTAGGCGGAGTAAGTCTGAGGTTTATGAAGGATTTTCTCATGTGTTTTCTACGGAATCGTCTCAGGGTGAGGTGTATGGAAAAATGGTTAGTCCTTTAGTGGAGGATTTTCTGAAGGGAAAAAGTGGGATGCTGACTGCACTCGGTCCTAGCGGCTCGGGTAAGACCCATACCATTTTTGGGAGTCCAAGAGATCCTGGTATGGTTCCTCTGGCTCTTCAACATATTTTCCGGACAGAGTCGAGTGATTCTCAACCCTTAAGATCATATTATTTATCAATCTTTGAAATATACTCAGAAAAAGGTAAAGGAGAAAAGATGTATGATCTTTCAGCTGATGGGGGCGAATTAACTATGCAGCAGTATACTATAAAGGGCCTTAAGGAGGTTTTTATTTCCAAGGCTGGAGAAGCTGAATCATTAGTGGCTTGTGCAATGACTAAACGTGCCACTGCAATAACGAATGCAAATAGCACATCAAGCCGGTCACAGTGCATCATTAATATCCGTAGAGTTGCTAACCAAGATGAAGTTGAGGATACATTGAACTGTGCCGTCTTGACCATTGCTGATCTCGCTGGAGCTGAACGAGAAAAAAGAACGGGGAATCAGGGGACAAGATTACTTGAAGCTAACTTCATCAACAATACATCAATGGTTTTTGGCTTGTGCCTAAGATCATTGTTTGAACACCAAAGGAATCCAAAGAAGCCACTGCAAAAGCATTTCCACAACTCTTTGTTGACCAAGTACCTTCGAGATTACCTGGAAGGAAAGAAGCGAATGACCTTGATGTTAACTGTGAAAGCAGGAGAAGAAGATTATCTTGATACAACCTACCTTCTCAGACAAGCTTCACCTTATATGAAAATCAAGTTCAACAATGTTGTGGAACCATCAAACATCAACAAGAGACAATTGCAAACGTTATTTACATTTGAGGAGCAGAAAAGAACAAAATATAGTGTTCCTGAAGCTTGCTCGACTGAAGGAAAGGGACATCAAGAGGAAGGCCCCCTTCCTCATGAAGAGCCTCTAGTTAAAACCGACTGTAAAGCCACGAAGCCTAGCCATTCAAAAATGGCTGAAAGAAATCATTTGATCATGCAAAACTTTGCCAAAGCCATATGGCAAGTCTTGAAGCAGTATAGAGATAAACTAAAGAGTGCAGAGAATGAAAATCAAAATCTTCGAGAAGAAATTAAGAATGAAAAAATCAGATATTTTGAGCTGGAAAAGCAATGGAAAAATTCAAGATGTAGTACTTGCTCCAACTCCAAGGAAGATTATGCTGAAGCTGCATCAATCAAAGTAGTTACCAGTTTTGAGTCAAGAAGTGGTTTGGACGAGCACAGATTCAATGGTGTTCATGAGACAAATACGAACTCTTTCATCAAAGTGAAGGAATCCGATGGTTCCTCTCCCTGTGAAGACATAAATAATTTCTCAGAACCTGGTGAAGTTGAAGAGGCACATATAAACCGTGTAGACGAGACCACTCCTAGGAATGGATGCAAGACGGTGAAAAAATTTATGTACGAGGAGGCCGATGATTGTTGCCTAACAAAAAACTCAACTGCCTTTGGCACCCTGCAGTCACGTATCTTGGTGAAGTATGACAGCTGTTCATCAGTAGAGCTGGACAAGTTCAGTGAGCAAGATGAGGAATCTACCTCACCCGAATCCCCTTCACAAGAAATGTCGTTTATTCACTGCGATGCTCATGAGTGTGAAACTCAATCTGTACTTGATACTCCATTATACCAGCCAACTTCGGAGAAGTCTGAAAGGGATATAAGTGCTTTGAATGAAGACAAGGAATTCTTAGCGAAACTTTCGGATTCTCGACATCTACCTCCCACCGAGGATTTTGCATCTTCTCAAGAACAAAAGCACAACATTGATGTGCATTGCAGTGAGCTTAGAGCTGACATCTCAAGCAAACTAGAGAAACCAAAAAGGAGACTTTTGCCCGCGTCATCCACATTACTAAGGGATTTCAGCAATATGCATGTCGAGGATGATATTGAGGTGTCAAAGGCAAACAGAAATGGGAAAAAATCAGCTAAGGGTGAAAAAATTAGAACACAGGGTAACATCTCCCTCATGCGCATGCTGAAGGGAAATCACCTATTCTAA 2628 42.62 MFEDDGEAINRNRKMENGSPVQCPNTVTVRRNPPRRARATPAAKAAESNPPAAISSFPLQEILAMEVPQNPKDNSSSSSSSVQTPLSENLKVYLRVRPLQLKNLKKSRNADDQNSRSGHVWPQNPQKKKVTKEKNVKKKGCDACVTINDDHSVTVCPPMTLQESRRSKSEVYEGFSHVFSTESSQGEVYGKMVSPLVEDFLKGKSGMLTALGPSGSGKTHTIFGSPRDPGMVPLALQHIFRTESSDSQPLRSYYLSIFEIYSEKGKGEKMYDLSADGGELTMQQYTIKGLKEVFISKAGEAESLVACAMTKRATAITNANSTSSRSQCIINIRRVANQDEVEDTLNCAVLTIADLAGAEREKRTGNQGTRLLEANFINNTSMVFGLCLRSLFEHQRNPKKPLQKHFHNSLLTKYLRDYLEGKKRMTLMLTVKAGEEDYLDTTYLLRQASPYMKIKFNNVVEPSNINKRQLQTLFTFEEQKRTKYSVPEACSTEGKGHQEEGPLPHEEPLVKTDCKATKPSHSKMAERNHLIMQNFAKAIWQVLKQYRDKLKSAENENQNLREEIKNEKIRYFELEKQWKNSRCSTCSNSKEDYAEAASIKVVTSFESRSGLDEHRFNGVHETNTNSFIKVKESDGSSPCEDINNFSEPGEVEEAHINRVDETTPRNGCKTVKKFMYEEADDCCLTKNSTAFGTLQSRILVKYDSCSSVELDKFSEQDEESTSPESPSQEMSFIHCDAHECETQSVLDTPLYQPTSEKSERDISALNEDKEFLAKLSDSRHLPPTEDFASSQEQKHNIDVHCSELRADISSKLEKPKRRLLPASSTLLRDFSNMHVEDDIEVSKANRNGKKSAKGEKIRTQGNISLMRMLKGNHLF 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2077005 2088878 + CmaCh12G004020.1 Cma12g00402 304892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00402 875 MobiDBLite consensus disorder prediction 102 135 - -
Cma12g00402 875 PANTHER KINESIN-RELATED 85 789 IPR027640 GO:0003777|GO:0007018
Cma12g00402 875 MobiDBLite consensus disorder prediction 15 29 - -
Cma12g00402 875 Pfam Kinesin motor domain 116 449 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 PRINTS Kinesin heavy chain signature 203 224 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 PRINTS Kinesin heavy chain signature 317 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 PRINTS Kinesin heavy chain signature 349 367 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 PRINTS Kinesin heavy chain signature 404 425 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 ProSiteProfiles Kinesin motor domain profile. 89 454 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 MobiDBLite consensus disorder prediction 1 53 - -
Cma12g00402 875 Gene3D Kinesin motor domain 85 488 IPR036961 -
Cma12g00402 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 565 IPR027417 -
Cma12g00402 875 Coils Coil 543 577 - -
Cma12g00402 875 SMART kinesin_4 87 462 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00402 875 PANTHER KINESIN-LIKE PROTEIN KIF23 85 789 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00402 K10401 KIF18_19; kinesin family member 18/19 - csv:101210482 1267.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00402 Cma-Chr12:2077005 Cma07g00604 Cma-Chr7:2610395 1.63E-27 dispersed
Cma12g00402 Cma-Chr12:2077005 Cma01g01646 Cma-Chr1:11267130 4.91E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1139 . . . . . . . . . . . . . . . . . Bhi04g00138 . . . Hepe10g0163 . . Cla08g01415 Cam08g1894 Cec08g1471 Cco08g1604 Clacu08g1586 . Cre08g1369 . . . Cone20ag0437 . . . Cme03g01871 Blo17g00740 . Bda08g01213 . . Bpe05g00146 . . . . . Cma12g00402 . . Car15g00615 . . . . . . . . . . . . . . . . Lsi08g01310 Csa02g02143 Chy03g00784 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005587 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00402 Cma_Chr12 FPKM 2.994338 2.584801 0.513648 0.991448 5.893442 6.285523 5.527304 1.892184 1.41981 1.260692