Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00405 ATGCGACTTTCTCTTGGAAATACGGGATTTTGTATATTAGTAGAGGTTTGGAAGATGGGGAACACGCTGGGAGGCGTTTGTTCGAATGGAATAGTTAAGGATGATTTCGTGACAGAGAAGAAAGCGAAAATATCTGAGGATCGGAAAGGAAATTCGTGTTTGAATCCTGATGCAAGTGATCCGGATGAACTGCCGCTGAAGCTTCGTTCTGGTGTGATCTTATTGCCCTCACCTCCGTCTAAGACAGGAAGCAATAAGGTTGCACCAACGAACGCGCTGGGAGGGGCACGGAAAGCAGTTGATTTCTTGAAAACTTTTGGAAATAGTGTGTCAAATATGCACACAAACAATGGGTTTTTTACAGGCATGGCTTCAGATGGCAGGGAGATTTCCATTTTGGCTTTTGAAGTAGCAAACACCATAAGCAAAGTAGCCAATTTATCCCGATCTCTCTCAGAAGAAAACATCCAGCTCCTCAAAAAGGAACTTTCACAATCAGAAGGGATGAAACAATTAGTGTCAACAAATGTAGAGGAATTGCTAAGCATTGCAGCTGCTGACAAAAGACAGGAATTTGATGTGCTCTTACGGGAGGTTAAACGATTTGGAAACAGATGCAAGGATCCACAGTGGCACAATCTGGATCAGTTCTTTTCAAGACTAGATTTGAATGATTCGACTCAAAAACAAGCTCGAGAGGCAAGAGCAGCTATGCAGGAGCTAACTGTCTTAGCTCAGTATACTTCTGAATTATACCATGAAATACAAATATTGGAAAGATTTGAGCAAGATTACAGACGGAAAGTCGACGAAGTGGAGTTCATGAACCAAGCAGGAATAGGAGAAAGTCTCTCAATATTCCAAGGAGAATTAAACGTACAAAGAAAACTCGTAAGGAGCTTTCAGACCAAAGGCCTTTGGTCCAGAAATTTAGACGAGATTGTGGAAAAGCTCGTCGTGGTTGTAACATGGATAAATCAAGCAATAGCCAAAGCATTTGGAGACAAGAACACAGATAAAGCATTGGTTATAGAGGAGAGAAGTATTGGCCAGAAACTGGGCTCTGTTGGTCTTGCCTTACATTATTCAAACATAATCAGCCAGATAAATCTCATTGCATGTCGCCCAACCTCCATTCCTTCCAATATGAGGGATGCATTATACAGGGCGCTGCCAACAAGTGTTAAAACAGCTCTGCGCTCTCGATTGCAGGCTGTGGATGACAGTGAGGAGGAGCCAACTTATCTTGGTGTCAAAGTTGAAATGGATAAGATCCTTCGATGGCTTGTTCCTATAGCTGTAAACACAACCAAAGCACATCAAGCTTGTGGCCGGATTGGAGAATGGGCATCTCAAAGTAAGGAACAGAGCAAAGGCAGAGCCACGCAGAGCAACCCAATCCGCCTTCAAACGCTGTACCACGCAGACAAAGCGAAAACAGAGCAACAAATTATCGAGCTGGTCACATTGCTCCACCATCTCATCCATTTAGCGAAACACCAACAACAACGCTTAACATCTCTCCGCTGCCGATCTCCTACTCCCAGGGAAATGGCAATTTCTCAGCCAAATAAAGCTCGTCGGATTCAATACAATAGCCAGTTCGTCAAAACCACCAAGGACGGAGCTCCAGCTGACAACAGACCTTCGGCCGGTCAAACTCCGATCACAAAGAGGAATTTCAGCAACAGAAGGTACGGAAACCTCTAA 1710 43.92 MRLSLGNTGFCILVEVWKMGNTLGGVCSNGIVKDDFVTEKKAKISEDRKGNSCLNPDASDPDELPLKLRSGVILLPSPPSKTGSNKVAPTNALGGARKAVDFLKTFGNSVSNMHTNNGFFTGMASDGREISILAFEVANTISKVANLSRSLSEENIQLLKKELSQSEGMKQLVSTNVEELLSIAAADKRQEFDVLLREVKRFGNRCKDPQWHNLDQFFSRLDLNDSTQKQAREARAAMQELTVLAQYTSELYHEIQILERFEQDYRRKVDEVEFMNQAGIGESLSIFQGELNVQRKLVRSFQTKGLWSRNLDEIVEKLVVVVTWINQAIAKAFGDKNTDKALVIEERSIGQKLGSVGLALHYSNIISQINLIACRPTSIPSNMRDALYRALPTSVKTALRSRLQAVDDSEEEPTYLGVKVEMDKILRWLVPIAVNTTKAHQACGRIGEWASQSKEQSKGRATQSNPIRLQTLYHADKAKTEQQIIELVTLLHHLIHLAKHQQQRLTSLRCRSPTPREMAISQPNKARRIQYNSQFVKTTKDGAPADNRPSAGQTPITKRNFSNRRYGNL 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2098984 2103912 - CmaCh12G004050.1 Cma12g00405 304895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00405 569 Coils Coil 258 278 - -
Cma12g00405 569 PANTHER FACTOR G, PUTATIVE (DUF668)-RELATED 24 521 - -
Cma12g00405 569 Coils Coil 224 244 - -
Cma12g00405 569 MobiDBLite consensus disorder prediction 550 569 - -
Cma12g00405 569 MobiDBLite consensus disorder prediction 538 569 - -
Cma12g00405 569 PANTHER OS01G0873900 PROTEIN 24 521 IPR045021 GO:0045927
Cma12g00405 569 Pfam Domain of unknown function (DUF3475) 132 188 IPR021864 GO:0045927
Cma12g00405 569 Pfam Protein of unknown function (DUF668) 353 438 IPR007700 GO:0045927
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00405 - - - cmax:111492046 818.535
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00311 Cma12g00405 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00915 Cma-Chr1:5548260 Cma12g00405 Cma-Chr12:2098984 3.22E-136 dispersed
Cma09g01148 Cma-Chr9:6565016 Cma12g00405 Cma-Chr12:2098984 4.06E-138 dispersed
Cma12g00405 Cma-Chr12:2098984 Cma16g00174 Cma-Chr16:760969 9.52E-35 dispersed
Cma12g00405 Cma-Chr12:2098984 Cma05g00311 Cma-Chr5:1344169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1123 Blo01g01602 . Bda01g00479 Bda03g00293 Bpe02g00621 Bpe04g00249 . Bma01g02372 Cmo05g00313 Cmo12g00356 . . . Car12g00382 Sed11g1091 . Cpe07g00361 Bhi04g00143 Tan02g2080 Cmetu03g0952 . Hepe10g0159 . Lcy13g1908 Cla08g01418 Cam08g1897 Cec08g1474 Cco08g1607 Clacu08g1589 . Cre08g1373 Cone4ag1976 Cone7ag1894 Cone17ag1409 Cone20ag0074 . . . Cme03g01874 . Blo18g00778 . . Bpe02g01728 Bpe05g00141 Bma01g00884 Bma05g00166 . . . Cma12g00405 Cma05g00311 Car05g00258 . Cpe11g00259 . . . . . . . . . . . . . . . Lsi08g01313 Csa02g02139 Chy03g01380 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003603 2 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 3 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00405 Cma_Chr12 FPKM 24.564957 26.544849 0.0 0.12348 0.0 0.0 0.0 4.419956 3.865246 4.205893