Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00411 ATGTGTAAATCGTTCACGCTTTTTAATCTTCCATCTGAATCGCCTCGAAACCCTAGAGTGGCGTGGGAAGGCTGCAGCGTTTTACTCGACATCAATGATGGCGACCGACTGGTTTTTGCTCGACTCTCGCCTGCCTCTACGCTGAAAATCGGGAATAAAAGTTACTCTCTAAAGCCCTTGATCGGTCGTCCTTTCGGTTCGTTGTTTCAAATTGAAAGTGGAGACAATGGTCAACATTTGGCTTGTGTTACGCCCTCCAGAGAAGAAGAAACGGAGGAGATGAAGGAAGAACAGGTGGTCAAAGATGAGCTGAGAGATAACAGAGCGCTTGTAGACAATAATAAGGCACAAAGCCTCTCTAGTGAAGATATAGATGCAATGCGAAGTCAGGGTGCAACTGGTGATGAAATTGTGGAAGCTCTCATTGCCAACAGTGCAACATTTGAAAAGAAAACAGTTTTCTCTCAGGAGAAATATAGGCTCAAAAAACAGAAGAAATATGCTCCTAGGGTACTTTTGAGGAGACCTTTTACTCGAAGTATATGTGAGGCATACTTCAAGAAATTTCCAGCTAGAATCGGATTCTTGAGAGTGGATGCTCTGTCTCTTCTTCTTTCTTTTGCCAACGTGACTTCAAATTCTGATGTTCTTGTGTTTGATATGGTTGGTGGTCTTATCACTGGAGCTGTGGCTGAGCGCTTAGGAGGCAAGGGTTCTGTATGCAATGCATACCTTGGAAGTAATCCAAATCCTATGGAAATAGTAAGAATGTTCAACTTTGATGATGAAATTTGCGCAAGGATAATGCGTTCACCTCTTACCGATCTTGCCTCATCCCAAGTTTCTAATGGTGAACATGAAGTCAATATTAAAGCACAGGATGAGGCATCTGAACCTGTTAACATGGATGAAGGCCCTCCACCATCTACAGACCAGTCTTCAGGTCTCAACTCAGAGTCTATAGTTTCTCCATTAACTAAAGTATTAAAATGCGCAAAGGCTGGAGATAAGGCACCGCCAGAAGTTGTTAAATCATGGAAAGAAAATGGTTTTACAAGCCTAATAATTGCTGCTCCACAGTCGGATGCATGGGGCCTTGTTAAAGATCTGTTGCCTCTTGTAGCAAATTCTGCCCCATTTGCTATCTATCACCAGTATCTTCAGCCTCTTGCAACTTGCATGCATAAACTGCAGCTTGAGAAGATGGCAATCAGCTTGCAAATATCAGAACCTTGGCTTCGTGAATACCAGGTTCTTCCTTCGAGAACCCATCCCTTCATGCAGATGAATGCGTTTGGTGGATACATTCTCAGTGGGACGAAGATATGTGATGTAGCCCATCAATAA 1347 43.13 MCKSFTLFNLPSESPRNPRVAWEGCSVLLDINDGDRLVFARLSPASTLKIGNKSYSLKPLIGRPFGSLFQIESGDNGQHLACVTPSREEETEEMKEEQVVKDELRDNRALVDNNKAQSLSSEDIDAMRSQGATGDEIVEALIANSATFEKKTVFSQEKYRLKKQKKYAPRVLLRRPFTRSICEAYFKKFPARIGFLRVDALSLLLSFANVTSNSDVLVFDMVGGLITGAVAERLGGKGSVCNAYLGSNPNPMEIVRMFNFDDEICARIMRSPLTDLASSQVSNGEHEVNIKAQDEASEPVNMDEGPPPSTDQSSGLNSESIVSPLTKVLKCAKAGDKAPPEVVKSWKENGFTSLIIAAPQSDAWGLVKDLLPLVANSAPFAIYHQYLQPLATCMHKLQLEKMAISLQISEPWLREYQVLPSRTHPFMQMNAFGGYILSGTKICDVAHQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2122862 2129785 + CmaCh12G004110.1 Cma12g00411 304901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00411 448 Coils Coil 87 107 - -
Cma12g00411 448 MobiDBLite consensus disorder prediction 280 318 - -
Cma12g00411 448 PIRSF TRM6 13 448 IPR017423 GO:0030488|GO:0031515
Cma12g00411 448 Pfam Gcd10p family 26 293 IPR017423 GO:0030488|GO:0031515
Cma12g00411 448 PANTHER TRANSLATION INITIATION FACTOR EIF3-RELATED 16 444 IPR017423 GO:0030488|GO:0031515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00411 K03256 TRM6, GCD10; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit - csv:101206727 740.725
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1097 . . . . . . . . . Cmo12g00362 . . . Car12g00389 Sed03g1690 . Cpe07g00369 Bhi04g00157 Tan02g2066 Cmetu03g1946 . Hepe10g0143 . Lcy13g1919 Cla08g01430 Cam08g1909 Cec08g1485 . Clacu08g1600 . Cre08g1385 Cone4ag1967 Cone7ag1880 . . . . . Cme03g01888 Blo17g00747 . Bda08g01223 . . Bpe05g00137 . Bma05g00162 . . . Cma12g00411 . . . . . . . . . . . . . . . . . . . Lsi08g01328 Csa02g02127 Chy03g01392 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010689 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00411 Cma_Chr12 FPKM 4.654947 3.978685 7.834651 7.79722 8.246842 8.681664 9.638628 11.076381 11.19232 11.754638