Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00412 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCGTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCAACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATACTAATGACTCTGATGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGCATCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACGCTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTGTATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGAATCTTTTCATAACAGAAGAAGACATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTTTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCGATTGATTTGTACCTCTTGAGGGCTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTCCTCTGAACTACAGAAGAATCATAAGATATCTACCAAAGATACTTATTGTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTCAATCACATTCTCAAGTGAGCATTACGCATTTATGGGGTGAAGAACACAACTTTTAA 1245 42.01 MLNAVEDLLLRHGHSDFRSHLRPSHSHHRGDMSLSSSSASSSLAQPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDTNDSDALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDEHLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKNLFITEEDILQIPCFKNQTLIAVKAPQASFIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAEKQELEESTFHQEKVSSELQKNHKISTKDTYCSSFQEFQGMQRILPLYNNMDDDYWFQSHSQVSITHLWGEEHNF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2131679 2135820 + CmaCh12G004120.1 Cma12g00412 304902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00412 414 PANTHER TRANSCRIPTION FACTOR E2F 21 411 IPR015633 GO:0000978|GO:0006357
Cma12g00412 414 MobiDBLite consensus disorder prediction 107 125 - -
Cma12g00412 414 MobiDBLite consensus disorder prediction 93 154 - -
Cma12g00412 414 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Cma12g00412 414 CDD E2F_DD 233 340 IPR032198 GO:0046983
Cma12g00412 414 SUPERFAMILY E2F-DP heterodimerization region 234 338 IPR037241 -
Cma12g00412 414 Gene3D - 228 340 - -
Cma12g00412 414 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Cma12g00412 414 MobiDBLite consensus disorder prediction 17 42 - -
Cma12g00412 414 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Cma12g00412 414 Pfam E2F transcription factor CC-MB domain 239 337 IPR032198 GO:0046983
Cma12g00412 414 Gene3D - 152 224 IPR036388 -
Cma12g00412 414 Coils Coil 228 272 - -
Cma12g00412 414 PANTHER TRANSCRIPTION FACTOR E2FC 21 411 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00412 K06620 E2F3; transcription factor E2F3 - csv:101211469 615.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00301 Cma12g00412 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00412 Cma-Chr12:2131679 Cma20g00153 Cma-Chr20:751925 6.33E-85 dispersed
Cma12g00412 Cma-Chr12:2131679 Cma05g00301 Cma-Chr5:1301819 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1096 . . . . . . . . Cmo05g00304 Cmo12g00363 . . . Car12g00390 Sed03g1691 . Cpe07g00370 Bhi04g00158 Tan02g2064 Cmetu03g0122 . Hepe10g0142 . Lcy13g1920 Cla08g01431 Cam08g1910 Cec08g1486 . Clacu08g1601 . Cre08g1386 . . . . . . . Cme03g01889 . . . . . . . . . . . Cma12g00412 Cma05g00301 Car05g00249 . Cpe11g00250 . . . . . . . . . . . . . . . Lsi08g01330 Csa02g02126 Chy03g01393 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35977 PF16421 E2F_CC-MB 3.50E-26 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00412 Cma_Chr12 FPKM 5.048435 4.956758 2.92553 2.064794 1.753734 2.227605 2.503303 2.421831 2.030406 2.395373