Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00412 ATGTTGAACGCCGTCGAAGATCTCCTCCTCCGTCACGGACACTCCGATTTCCGATCACATCTCCGTCCTTCTCACTCTCACCATCGCGGCGACATGTCCTTGTCTTCGTCTTCTGCTTCTTCTTCTCTTGCTCAACCTATTCCTCAGTGTTTCCGTCAGTATCATCGATCTTCTCCGCCGTCGGATCAATCCAACGCTTGCGACGGTCGTCTTGCTCTCGACGCACATTCTACAGTTGCTATGCTCGACTTGAAACGGACATATGATACTAATGACTCTGATGCTTTGGCTAGCAAACGAGCTGTAGCCTCTGAACAGAGGATGCGATCTAATGATTCTTCTTGTGAACCAGTATCTAATGCAACTGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCCAGGACTAAAAAATCTACAGATGAGCATCTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGACAGCTCTTTAGGCTTCTTGACGAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACGCTTGATCTAAATAAAACGGCGGACATATTAAAGGTTCAAAAGAGGAGGATTTATGACATTACAAATGTTCTTGAAGGGATAGGGCTTATAGAAAAAACCACCACGAATCACATACGTTGGAAGGGAGGCGTGAGGCATGAGGCTCAAGAGCTCAACGATCAAGTTGGTAGATTTAAGGCTGAAGTTAAGAGTTTGTATGCAGATGAACGCAGACTTGATGAACTTATAAGGATGAAGCAAGAACTTCTGAGAAATCTCGAGGAAAATGAAAATCACAGAAAGAATCTTTTCATAACAGAAGAAGACATCTTGCAGATTCCTTGCTTCAAGAATCAGACACTTATAGCAGTTAAAGCCCCCCAAGCTAGCTTTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCGATTGATTTGTACCTCTTGAGGGCTGAAAAACAAGAGCTGGAAGAAAGCACTTTCCACCAAGAGAAAGTGTCCTCTGAACTACAGAAGAATCATAAGATATCTACCAAAGATACTTATTGTTCTTCTTTCCAAGAGTTTCAGGGAATGCAGAGAATTTTACCTTTATATAATAATATGGACGATGATTATTGGTTTCAATCACATTCTCAAGTGAGCATTACGCATTTATGGGGTGAAGAACACAACTTTTAA 1245 42.01 MLNAVEDLLLRHGHSDFRSHLRPSHSHHRGDMSLSSSSASSSLAQPIPQCFRQYHRSSPPSDQSNACDGRLALDAHSTVAMLDLKRTYDTNDSDALASKRAVASEQRMRSNDSSCEPVSNATEKQNKKLKLQKNSKSRTKKSTDEHLDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADILKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGGVRHEAQELNDQVGRFKAEVKSLYADERRLDELIRMKQELLRNLEENENHRKNLFITEEDILQIPCFKNQTLIAVKAPQASFIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAEKQELEESTFHQEKVSSELQKNHKISTKDTYCSSFQEFQGMQRILPLYNNMDDDYWFQSHSQVSITHLWGEEHNF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2131679 2135820 + CmaCh12G004120.1 Cma12g00412 304902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00412 414 PANTHER TRANSCRIPTION FACTOR E2F 21 411 IPR015633 GO:0000978|GO:0006357
Cma12g00412 414 MobiDBLite consensus disorder prediction 107 125 - -
Cma12g00412 414 MobiDBLite consensus disorder prediction 93 154 - -
Cma12g00412 414 SMART E2F_TDP_2 157 222 IPR003316 GO:0005667|GO:0006355
Cma12g00412 414 CDD E2F_DD 233 340 IPR032198 GO:0046983
Cma12g00412 414 SUPERFAMILY E2F-DP heterodimerization region 234 338 IPR037241 -
Cma12g00412 414 Gene3D - 228 340 - -
Cma12g00412 414 Pfam E2F/DP family winged-helix DNA-binding domain 159 222 IPR003316 GO:0005667|GO:0006355
Cma12g00412 414 MobiDBLite consensus disorder prediction 17 42 - -
Cma12g00412 414 SUPERFAMILY Winged helix DNA-binding domain 157 220 IPR036390 -
Cma12g00412 414 Pfam E2F transcription factor CC-MB domain 239 337 IPR032198 GO:0046983
Cma12g00412 414 Gene3D - 152 224 IPR036388 -
Cma12g00412 414 Coils Coil 228 272 - -
Cma12g00412 414 PANTHER TRANSCRIPTION FACTOR E2FC 21 411 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00301 Cma12g00412 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00412 Cma-Chr12:2131679 Cma20g00153 Cma-Chr20:751925 6.33E-85 dispersed
Cma12g00412 Cma-Chr12:2131679 Cma05g00301 Cma-Chr5:1301819 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35977 PF16421 E2F_CC-MB 3.50E-26 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00412 K06620 - csv:101211469 615.92