Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00420 ATGGATGATAGCGGGCATCGGGAGAATGGAAGGCACAAAGCAGAGCAGTATAAGTCAGCTCAGGGTCAGTGGATGATGCAGCATCAGCCATCAATGAAGCAGATAATGGCAATAATGGCTGAGAGAGATGCAGCCATTCAAGAGAGAAACTTGGCCCTCTCTGAGAAGAAGGCTGCAATAGCAGAACGAGACATGGCTTATCTACAGCGAGATGCTGCAATTGCAGAAAGGAACAATGCTCTATTAGAAAGAGACAATGCCATTGCAACTCTCCAGTATCGTGAAAACTCCCTCACAAACAACAATTTATCATGTCCACCAGGATGTCAAATCGCCAGGGGAGTGAAGCATATACACCATCCCCAGCAGCAGCAGCAGCAGCAGCACACACATAATCACGTGCCTCACATGAATGAAAGTAACTATAATTCGAGAGAATTGCATGCCAATGATGCCTGCCCCATACCGCCCCAAGTTGCTTCTGAATCGACAAAGGTGCGGCGAAACAAGCGAACCAAAGAGGATAATAAGACAGTTACAGCACCAAACAAGAAGGTTTCTAAAGCTCCAAGGAAGGTCAAAAGAGAAGCTGAAGACTTGAATAAGATAATGCTGGGCAAGTCACAAGAATGGAAGGATGGAATTGGTATAGTGAGTGGCGGGGATGATCTTAACAAGCATCTGGTCGTGTCGAAGTCGGATTGGAAAGGGCAGGATCTGGGATTGAACCAGGTTGCCTTCGATGAATCCACCATGCCAGCTCCAATATGCTCCTGCACAGGAGTTATAAGACAATGCTACAAATGGGGAAACGGTGGATGGCAATCTGCTTGTTGTACTACCACTGTGTCAATGTATCCGTTGCCAGCAGTTCCCAACAAACGCCACGCCAGAGTCGGTGGCCGGAAGATGAGTGGAAGCGCTTTTAACAAGCTGCTCAGCCGCCTTACAGCTGAAGGCCATGATCTCTCTGCGCCAGTTGATCTTAAGAATCACTGGGCAAAGCATGGAACAAATCGTTACATCACCATCAAATAG 1038 47.4 MDDSGHRENGRHKAEQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLTNNNLSCPPGCQIARGVKHIHHPQQQQQQQHTHNHVPHMNESNYNSRELHANDACPIPPQVASESTKVRRNKRTKEDNKTVTAPNKKVSKAPRKVKREAEDLNKIMLGKSQEWKDGIGIVSGGDDLNKHLVVSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTVSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLTAEGHDLSAPVDLKNHWAKHGTNRYITIK 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2178482 2179603 - CmaCh12G004200.1 Cma12g00420 304910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00420 345 MobiDBLite consensus disorder prediction 153 194 - -
Cma12g00420 345 MobiDBLite consensus disorder prediction 164 181 - -
Cma12g00420 345 Pfam GAGA binding protein-like family 1 345 IPR010409 -
Cma12g00420 345 SMART GAGA_bind_2 1 345 IPR010409 -
Cma12g00420 345 Coils Coil 58 85 - -
Cma12g00420 345 MobiDBLite consensus disorder prediction 1 15 - -
Cma12g00420 345 PANTHER - 1 345 IPR010409 -
Cma12g00420 345 PANTHER PROTEIN BASIC PENTACYSTEINE6 1 345 - -
Cma12g00420 345 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00420 - - - csv:101207697 629.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00420 Cma-Chr12:2178482 Cma19g00701 Cma-Chr19:7189965 1.71E-120 dispersed
Cma11g01067 Cma-Chr11:5855865 Cma12g00420 Cma-Chr12:2178482 9.50E-113 wgd
Cma12g00420 Cma-Chr12:2178482 Cma19g00700 Cma-Chr19:7183906 2.80E-113 wgd
Cma12g00420 Cma-Chr12:2178482 Cma05g00293 Cma-Chr5:1258878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1061 . . . . . . . . . . . . . . . . . Bhi04g00240 . . . Hepe10g0135 . . Cla08g01437 Cam08g1917 Cec08g1493 . . . Cre08g1393 Cone4ag1956 Cone7ag1869 . . . . . Cme03g01896 . Blo18g00782 . . . . Bma01g00731 . . . . Cma12g00420 . . Car15g00648 . . . . . . . . . . . . . . . . Lsi08g01338 . Chy03g01399 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma15g00880 CST 1 281 BBR/BPC Transcription factor family AT2G01930 54.7 8.6e-81 297.7
Cma04g02151 CST 337 616 BBR/BPC Transcription factor family AT2G01930 53.4 5.2e-78 288.5
Cma15g00879 . 1 278 BBR/BPC Transcription factor family AT2G01930 54.7 3.2e-75 279.3
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
Cma12g00420 . 239 345 BBR/BPC Transcription factor family AT1G68120 57.9 2.5e-37 153.3
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT2G21240 63.5 1.3e-82 303.9
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT2G21240 61.4 4.8e-82 302.0
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT2G21240 60.8 3.9e-76 282.3
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT2G21240 51.5 1.9e-62 236.9
Cma11g01067 . 1 313 BBR/BPC Transcription factor family AT4G38910 60.1 4.7e-71 265.4
Cma19g00701 . 1 315 BBR/BPC Transcription factor family AT4G38910 58.1 1.6e-66 250.4
Cma19g00700 . 1 305 BBR/BPC Transcription factor family AT4G38910 57.7 1.5e-61 233.8
Cma05g00293 . 18 339 BBR/BPC Transcription factor family AT4G38910 50.6 4.3e-56 215.7
Cma12g00420 . 91 345 BBR/BPC Transcription factor family AT5G42520 63.2 1.2e-82 303.9
Cma05g00293 . 108 339 BBR/BPC Transcription factor family AT5G42520 58.2 1.3e-76 283.9
Cma15g00880 CST 161 281 BBR/BPC Transcription factor family AT2G35550 60.3 8.2e-42 167.9
Cma15g00879 . 159 278 BBR/BPC Transcription factor family AT2G35550 60.8 1.4e-41 167.2
Cma04g02151 CST 162 281 BBR/BPC Transcription factor family AT2G35550 59.2 3.1e-41 166.0
Cma12g00420 . 231 345 BBR/BPC Transcription factor family AT2G35550 57.4 1.6e-37 153.7
Cma11g01067 . 207 313 BBR/BPC Transcription factor family AT2G35550 58.9 3.6e-37 152.5
Cma19g00701 . 209 315 BBR/BPC Transcription factor family AT2G35550 57.9 1.0e-36 151.0
Cma05g00293 . 230 339 BBR/BPC Transcription factor family AT2G35550 60.0 1.4e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004398 3 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35979 PF06217 GAGA_bind 2.00E-105 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00420 Cma_Chr12 FPKM 43.55106 41.408035 37.949722 33.917637 44.435471 56.508934 46.118549 48.653389 52.085873 42.4874