Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00423 ATGGAGGGAGACAATAAGAAGTCTGGTTTTAGGAAAAGAACGAAGCCCAAGGAGGGTGGGTTTGACTCAGATGATGACGAGCCTATTGGATCTCTGCTGAAGTTGAAGAGATCACGAAACTCCATGAAGAACAAGGTAGGTGTAGATTTTGGCGGTGAAAGAGACAAGATGGTTGACAAGAAAGTAGCGAAGTTGCCGGTGCAAGAGGAGGACTTTGGGGGGATGGACGATACTTTAGCAAGTTTCAGAAAGAAGTTGAGGCGTCCAAAAAAGGTTAGCGGGTTTGGAACATCTAAGGAACAGAGTTCTGGTTTTAGCCAGGCAGAATCATCAGATCCGATATTGAACTCATGCAGAGGACGAGGGGATTTAGACTCGAGTTTTAGACCAGAAAATAGTGAATCAATGGGCCGTGAAGGGTCTGATCCATCTTCAAAGATTGATGCAGAAATGGTGTGTGAAACACCTGATTTTGAATTAAAACACATGGAGACAGTTATCTCTAGGAGGAGAACTTCTAATTGCTCTTTTGACGAACAGTTGGATGATTCATTGTCAGCATTTGCCCAAAAGATTCAATCTGGTTCAACTAGGAAATCATTGGTATCGACGACATGTAAACCGGAATGCAAGGCTGAGACTTCAGAAGATAAATTGAGTAACTTTTCTAGAGTTTTATCTGGGGATCAAGAAACCTACCATGTAGTGAGTTCTAGTTCTTCTGCTAAGCTGGCACAGGTTGTCAAAAAATCAGATTCTGAACTTACTAGGCCATATTTAATATCCTGTTCCTGTTACAGTAGAGAAAATCGTAATCCTGGTCTAGGACAATGCCAAGGGGTTGAAGGAGACCGAGAAGAAATTCAATGCGGTGTAAATAATTATGATAATGCTGACATCAAACCATGCATACCACGCATAGTTGCTGATGAAGATGGCAAAAACTTTAGTCATATTCAATTTGGGGACAATTTCCAGTCGCTGGAAAGGAAGGTCTCCTGTGAAACCAAGAATGGACTAAAACATTGTTCATGTGGCGATACGATGGGGCTAGGTGAAAGTCATCTTAATGAAGATATGCACAATTCTTGTCATGCCCTAGAACAGGCAAATGAAAACAATGGCCTTTGTGGGGGTGTTTCCTATGGAGATTTTTGTGACGTGGTGGCCCATGAGTCCACAGTCGCTTTGTCTAAAACAACTTCAGGTGTAGATTGCGAAGGAAAAGACAGATCACTGGCTATACATTATGATGAATTGCCCAACTCCGCCAATGTTTGTGAAAGTTATTCCAAAGGATTCTGTAAATCTACTAAAAAATTAAAGATTTCTAATCCTTCTTCCGAAGGAACTACACTCTCCAATCTTGAATTGTTGGCAGCCTTCGAGTCTATGAAAGCGGATAAAACTTGCTGTGACTCTGGTAATTTAGATACTGGTACTGACGAGCCAAATACTAAAGTTGGTTCTGTGCAGAATGAAAATGCTCTGATCTCTCATAGGATTTCAGATTCAACTGCCGTCTGCCCTGTTGGGAATTGCAGTATGATATCAGATAGTCAACCAGCCAAGGCTTCTGTAGAGGTAGATGGTCCAAATAATAATATACCTGCTGATAAAGAGGCCAAGGTATCTTCTCCTGGGTCTTTGACTCCAGATGATAATGACATTGAGGATGTAATATCTGCTCCTGGAAGTGAAAAAGATTTAAAGCTTTCAGTTTTGCAACGTGTTGTGCGCAAGACAAAGAAGCCTAGACGTGATGACATGGCTTATGAAGAAGATATTGATTGGGAGGTTTTGCTTAATGAGCGTGCAGTTGATAGTGACTATTCTTTTAGATCAAGAAGGGATTCTACATCAACAACTTCTACGGAGGCGGAAACTGGGGGTAGAGCTGCTGTGTCTGCAGGGCTTAAGGCTCATGCCGTTAGTCTACTTGAGAAGATTAAATTTAAGGAAGTGCTTAAGAGAAAAGGTGGGCTTCAAGAGTACTTAGCGTGCAGGAATCAGATCCTGGGCCTTTGGTGTAAAGATGTTACTCGCATTTTACATCTCGTTGACTGTGGGATCACTGATACTCCCTCTATGGATGAACCAACGCATTTTTCCCTTATTAGGGAGATCTATGCGTTTCTTAATCTTCGTGGTTATATAAATGCGGGAATTGCTTCTGAAAAAGCCAAGTCAGAATCTGGCTTCAAGTATGATTGTGAACGGGGAGAAAAGAAAGTTGGAGACATTAGTGTTGCTTCAGCTGCTGATTCTGAGGAAGGCATTTCTGCCATGGTTAAAAATTCTGATGCTTCTAATGCCAAGAACAGTGTTTCAGCTGGCTGTGAACTACCAGAAGACACTGAAGGAAGAGACCTTGTGACTGCAAATAATCAGGAGTTGCAAAAATTTGCGGAACACGAACAAGAATTGGTACATGACTTGGAGTATGGTACTCATGATCCTTCACCGGGAAAATTGGTAGGTATTGATGTTCCAGGTGAAGCTGCCGCCCAGTTAGCTCATCATTCAAGTAATGGTTGGCACCCAATTGGCTCCTCTAATGAGTGTGTAGGGGGTGATGAAAAACAGCAGAGTAATTCAGAAGTCAGAAAAAAGGTAATTGTTATTGGAGCCGGCCCTGCTGGCTTGACTGCTGCCAAGCACTTGCATCGTCAGGGCTTTACTGTCAACGTACTTGAAGCCAGGAATAGATTAGGAGGTCGTGTTTATACAGATCGCTCCTCTCTTTCGGTTCCTGTAGATCTTGGTGCAAGTATTATTACAGGAGTAGAGGCTGATGTTGCAACTGAAAGAAGACCTGATCCTTCTTCATTGATTTGCACTCAATTGGGCCTTGAGTTGACTGTGTTAAATAGTGACTGTCCTCTCTATGATATCGTTTCATGCAAAAAAGTTCCGGTAGACATTGATGAAGCTTTGGAAGCAGAATATAATAGTCTTCTTGATGACATGGTGTTGCTTGTTGCACAAAGAGGGGAGCATGCAATGACCATGTCTCTTGAGGAGGGTTTAGAATATGCCCTTAAGCGACGACGCATGGCTCGATTGGGAATGGATGTTCGTTCTGAGGAAGAAGTTTTGAGTCCCTTTGAGAGGCGAGTTATGAACTGGCATTTGGCTAACTTGGAGTATGGTTGTGCTGCTATGCTGAAGAAAGTATCGCTTCCTCATTGGAACCAGGATGATCTTTATGGAGGTTTTGGAGGAGCTCATTGTATGATCAAAGGGGGTTATAGCACTGTTGTTGAGTCTCTTGGTGGAGGACTCAATATTCACCTAAACCATGTTGTGGCTGATATTTCTTACAGCACCACTGATATTGGGTCGAATGTAAATCAATGTGCGAAGGTAAAAGTTTCCACAACCAATGGATGTGAGTTTCTTGGAGATGCTGTCCTTATTACTGTGCCTCTTGGGTGTTTGAAAGCAGAATCTATTAAGTTTTCTCCACCATTGCCTGAATGGAAGCGTCTGTCCATCCAGCGCCTTGGTTTTGGAGTTCTTAACAAAATTGTTCTTGAATTTCCACAAGTTTTCTGGGATGACTCTGTGGATTATTTTGGGGCAACTGCAGAGGAAACAAAGTGGAGGGGGCAGTGTTTCATGTTTTGGAATGTAAGAAAAACAGTTGGTGCTCCTGTTCTCATTGCGCTAGTGGTTGGTCAGGCGGCTGTGGAGAGACAATACATGAGCTCTTCCGATAACATAAGCCATGCATTAATGGTTCTTCGCAAACTTTTTGGAGAAGCTGTGGTGCCTGACCCAGTTGCATCTGTGGTAACTGATTGGGGAAGAGATCCGTTTAGTTATGGTGCTTACTCCTATGTTGCTGTTGGAGCGTCTGGAGAGGACTATGACATTTTAGCCAGGCCTGTTGAAAACTGTTTGTTTTTTGCTGGTGAAGCTACATGCAAGGAGCATCCTGACACTGTTGGGGGTGCAATGATGAGTGGTCTAAGAGAGGCTGTACGCATGATTGATGTATTGAGCACTGGTTATGATTATACAGCAGAAGTAGAGGCAATGGAAGCTGCTCAGAGGCAGTCTGAGTGTGAGAATGATGAAGTTGGGGACGTAATTACACGACTCGATGATGTTAAGATTTCTGATGCTCTCTACAAAAATTCTATGGATTGTGCCAAAGAAGCCTTACTTCAGGACTTGTTTTCTAGTGCGAAAACGACTGCAGGGAGATTGCATGTCGCAAAAGAGTTGTTGAAACTCTCTGTTGAGACATTGAAGTCCTTCGCAGGGACCAAAGAAGGTCTGACAGTTCTCAACTCATGGATTCTGGACTCAATGGGGAAGGATGGGACTCAACTTCTTCGGCAGTGTGTTCGTATTCTTGTGCTAGTTTCAACTGATCTACTTGCAGTTCGCTTATCAGGCATAGGTAAAACTGTCAAAGAAAAGGTATGTGTGCATACAAGCCGTGACATTCGCGCCATTGCGAGTCAGTTGGTTAGCATTTGGCTTGAAGTTTTCCGTAAAGAAAAAGCTGCTCATGGGGGGTTAAAACTCTCAAAGTCGGTTTCTACTGTAGAATCATTGAAGAGGAAATCCAATAAAGATTCTTCTGGGAGACCTCCTCTGCATGCAAACAACAGCACACTGGATAGTAGAGGCAATTTGCAGACTTCTACAATTCACTTGCCTTCTGATGTCAATACGAAAAATGATAATAGCAAACAATTGAAATTAGAAATGGAAAATTCATCAAAATCAGATATCAGTTCATCAAGGTCAAGGGGTTCATTAGGAAAGCAGGATGCAGAAATGGAAGACAACAACATTGCTATGACAGAAGAAGAGGAGGCTGCCTTTGCTGCTGCTGAGGCAGCACGTGCAGCAGCACTTGCAGCTGCGAAGGCGTACGCATCTTCTGAAGCTAAGTGTGCATTGCAGCTCCCTAAAATCCCTTCCTTTCACAAATTTGCTCGAAAGGAGCATTGCGCACAAATGGATGAGTGCGAGTCTAAAAGGAAATTGTCTGGCAGTGTGCTAGGAAGACAGGATTGTATATCAGAAATAGATTCAAGGAATTGCAGGGTCAGGAACTGGTCTGTGGAATTTTCTGCTGCTTGTGTTAATCTCGAAAGTTCACGAATGTCTGCAGATAACCTTTCGCAAAGGAGCCATTCAAATGAGATTGTTAGCCAATTAAACTTCAGGGAGCACTCCGGTGAAAGTGCCCCTGTGGATAGCAGTATATACACGAAAGCATGGGTTGATACAGCTGGCAGTGTTGGAATGAAAGATTATCATGCAATTGAGAGATGGCGATCTCAAGCAGCTGCAGCTCATGTAAACGATGAGGAGGATTCAAACACTGCTGGGAATAAACCCACTTGGAATAGCGATCAATTAGCGAATGAAAGCTCGATATCACAAGTGACGATCAACAAGGAGCCTTTACGAAACCATCATCGTGGGGCTGACAGAATTAAGCAGGCCGTAGTTGATTATGTTGCATCACTCTTGATGCCCCTTTACAAAGCAAGGAAAATTGACAAGGATGGATACAAGACAATTATGAAGAAAAGTGCAACCAAGGTCATGGAACAGGCTACTGATGCAGAGAAAGGCATGACTGTTTCTGAGTTTCTTGATTTCAAACGTAGGAACAAGATTCGTGCCTTTGTTGATAAATTAATAGAGAGGCATATGGCTACGAAGCCACAGAACATAACTTTGATCTCGTCCCTTATGGTAGCCCGATGCGATCGAATTGACCGACTCGGTGACTGGTTCTTCCTAGTTTTTGCTTCACTTTATTGCCTGTCGTGCTAG 5808 42.98 MEGDNKKSGFRKRTKPKEGGFDSDDDEPIGSLLKLKRSRNSMKNKVGVDFGGERDKMVDKKVAKLPVQEEDFGGMDDTLASFRKKLRRPKKVSGFGTSKEQSSGFSQAESSDPILNSCRGRGDLDSSFRPENSESMGREGSDPSSKIDAEMVCETPDFELKHMETVISRRRTSNCSFDEQLDDSLSAFAQKIQSGSTRKSLVSTTCKPECKAETSEDKLSNFSRVLSGDQETYHVVSSSSSAKLAQVVKKSDSELTRPYLISCSCYSRENRNPGLGQCQGVEGDREEIQCGVNNYDNADIKPCIPRIVADEDGKNFSHIQFGDNFQSLERKVSCETKNGLKHCSCGDTMGLGESHLNEDMHNSCHALEQANENNGLCGGVSYGDFCDVVAHESTVALSKTTSGVDCEGKDRSLAIHYDELPNSANVCESYSKGFCKSTKKLKISNPSSEGTTLSNLELLAAFESMKADKTCCDSGNLDTGTDEPNTKVGSVQNENALISHRISDSTAVCPVGNCSMISDSQPAKASVEVDGPNNNIPADKEAKVSSPGSLTPDDNDIEDVISAPGSEKDLKLSVLQRVVRKTKKPRRDDMAYEEDIDWEVLLNERAVDSDYSFRSRRDSTSTTSTEAETGGRAAVSAGLKAHAVSLLEKIKFKEVLKRKGGLQEYLACRNQILGLWCKDVTRILHLVDCGITDTPSMDEPTHFSLIREIYAFLNLRGYINAGIASEKAKSESGFKYDCERGEKKVGDISVASAADSEEGISAMVKNSDASNAKNSVSAGCELPEDTEGRDLVTANNQELQKFAEHEQELVHDLEYGTHDPSPGKLVGIDVPGEAAAQLAHHSSNGWHPIGSSNECVGGDEKQQSNSEVRKKVIVIGAGPAGLTAAKHLHRQGFTVNVLEARNRLGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICTQLGLELTVLNSDCPLYDIVSCKKVPVDIDEALEAEYNSLLDDMVLLVAQRGEHAMTMSLEEGLEYALKRRRMARLGMDVRSEEEVLSPFERRVMNWHLANLEYGCAAMLKKVSLPHWNQDDLYGGFGGAHCMIKGGYSTVVESLGGGLNIHLNHVVADISYSTTDIGSNVNQCAKVKVSTTNGCEFLGDAVLITVPLGCLKAESIKFSPPLPEWKRLSIQRLGFGVLNKIVLEFPQVFWDDSVDYFGATAEETKWRGQCFMFWNVRKTVGAPVLIALVVGQAAVERQYMSSSDNISHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAVGASGEDYDILARPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRMIDVLSTGYDYTAEVEAMEAAQRQSECENDEVGDVITRLDDVKISDALYKNSMDCAKEALLQDLFSSAKTTAGRLHVAKELLKLSVETLKSFAGTKEGLTVLNSWILDSMGKDGTQLLRQCVRILVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSIWLEVFRKEKAAHGGLKLSKSVSTVESLKRKSNKDSSGRPPLHANNSTLDSRGNLQTSTIHLPSDVNTKNDNSKQLKLEMENSSKSDISSSRSRGSLGKQDAEMEDNNIAMTEEEEAAFAAAEAARAAALAAAKAYASSEAKCALQLPKIPSFHKFARKEHCAQMDECESKRKLSGSVLGRQDCISEIDSRNCRVRNWSVEFSAACVNLESSRMSADNLSQRSHSNEIVSQLNFREHSGESAPVDSSIYTKAWVDTAGSVGMKDYHAIERWRSQAAAAHVNDEEDSNTAGNKPTWNSDQLANESSISQVTINKEPLRNHHRGADRIKQAVVDYVASLLMPLYKARKIDKDGYKTIMKKSATKVMEQATDAEKGMTVSEFLDFKRRNKIRAFVDKLIERHMATKPQNITLISSLMVARCDRIDRLGDWFFLVFASLYCLSC 1935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2188465 2199277 + CmaCh12G004230.1 Cma12g00423 304913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00423 1935 SUPERFAMILY FAD-linked reductases, C-terminal domain 1170 1281 - -
Cma12g00423 1935 Pfam SWIRM domain 640 720 IPR007526 GO:0005515
Cma12g00423 1935 ProSiteProfiles SWIRM domain profile. 630 730 IPR007526 GO:0005515
Cma12g00423 1935 Gene3D - 959 1287 - -
Cma12g00423 1935 Gene3D - 630 733 IPR036388 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1 33 - -
Cma12g00423 1935 Pfam Flavin containing amine oxidoreductase 880 1332 IPR002937 GO:0016491
Cma12g00423 1935 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 3 574 1899 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1577 1592 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1 50 - -
Cma12g00423 1935 SUPERFAMILY Homeodomain-like 632 726 IPR009057 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 95 114 - -
Cma12g00423 1935 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1425 1509 IPR035441 -
Cma12g00423 1935 PANTHER FLAVIN MONOAMINE OXIDASE 574 1899 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 86 146 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1771 1797 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 525 554 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1522 1597 - -
Cma12g00423 1935 SUPERFAMILY FAD/NAD(P)-binding domain 869 1334 IPR036188 -
Cma12g00423 1935 Gene3D - 872 1330 IPR036188 -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1533 1566 - -
Cma12g00423 1935 MobiDBLite consensus disorder prediction 1782 1797 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00423 - - - bhj:120075972 3016.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00288 Cma12g00423 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01326 Cma-Chr1:9464935 Cma12g00423 Cma-Chr12:2188465 3.35E-68 dispersed
Cma09g00891 Cma-Chr9:4389345 Cma12g00423 Cma-Chr12:2188465 2.37E-94 dispersed
Cma12g00423 Cma-Chr12:2188465 Cma15g00505 Cma-Chr15:2286918 7.58E-91 dispersed
Cma20g00737 Cma-Chr20:3450444 Cma12g00423 Cma-Chr12:2188465 1.78E-06 dispersed
Cma05g01395 Cma-Chr5:10423965 Cma12g00423 Cma-Chr12:2188465 1.09E-30 transposed
Cma12g01290 Cma-Chr12:10004002 Cma12g00423 Cma-Chr12:2188465 2.17E-23 transposed
Cma12g00423 Cma-Chr12:2188465 Cma05g00288 Cma-Chr5:1236640 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1052 Blo01g01586 . . . Bpe02g00363 . Bma04g00234 . Cmo05g00295 Cmo12g00373 . . . Car12g00399 . . Cpe07g00378 Bhi04g00235 . . . Hepe10g0131 . . . . . . . . . Cone4ag1951 Cone7ag1863 . . . . . . . . . . . . . . . . . Cma12g00423 Cma05g00288 Car05g00239 . Cpe11g00239 . . . . . . . . . . . . . . . Lsi08g01341 Csa02g02114 Chy03g01402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004381 1 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35980 PF01593 Amino_oxidase 1.50E-99 CL0063 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00423 Cma_Chr12 FPKM 8.506456 9.269256 7.182042 8.274288 9.596257 9.644805 10.242069 8.735884 7.18349 7.397916