Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00424 ATGTCGTCAGCCTTCAGCGGCGATGAAACGGCGCCCTTCTTCGGCTTCCTCGGCGCTGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACGGCGAAGAGTGGGGTGGGAGTTGCGTCGATGGGAGTAATGAGGCCTGAGTTGGTTATGAAGTCGATTGTGCCGGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGCTTATTATTGCTGTGATTATCAGCACGGGGATTAACCCGAAGGCCAAATCTTATTACCTCTTCGATGGCTACGCGCATCTTTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTATCCGCTGGCATGGCTATTGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCACAGCAGCCTAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTCGCCGAAGCACTGGCTCTCTATGGACTTATTGTTGGCATTATTCTCTCTTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 498 52.01 MSSAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2199287 2201310 + CmaCh12G004240.1 Cma12g00424 304914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00424 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cma12g00424 165 SUPERFAMILY F1F0 ATP synthase subunit C 13 77 IPR035921 -
Cma12g00424 165 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 165 - -
Cma12g00424 165 SUPERFAMILY F1F0 ATP synthase subunit C 87 156 IPR035921 -
Cma12g00424 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00424 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00424 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00424 165 PRINTS Vacuolar ATP synthase 16kDa subunit signature 134 157 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00424 165 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cma12g00424 165 CDD ATP-synt_Vo_c_ATP6C_rpt2 89 156 - -
Cma12g00424 165 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cma12g00424 165 Gene3D - 11 162 IPR035921 -
Cma12g00424 165 Pfam ATP synthase subunit C 97 155 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma12g00424 165 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00288 Cma-Chr5:1236640 Cma12g00424 Cma-Chr12:2199287 1.76E-105 dispersed
Cma09g00796 Cma-Chr9:3874415 Cma12g00424 Cma-Chr12:2199287 2.99E-96 dispersed
Cma12g00424 Cma-Chr12:2199287 Cma12g00425 Cma-Chr12:2202888 7.52E-111 tandem
Cma12g00424 Cma-Chr12:2199287 Cma05g00287 Cma-Chr5:1233061 2.38E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00424 K02155 - csv:101209079 288.5