Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00425 ATGTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTTGGCTTTCTAGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCCGCTTATGGGACGGCAAAGAGCGGTGTTGGAGTTGCGTCGATGGGAGTGATGAGACCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCGCATTTGTCCTCTGGTTTGGCTTGTGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGGATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTTGCCGAAGCGCTTGCCCTTTATGGACTTATCGTCGGTATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA 495 51.31 MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2202888 2204653 + CmaCh12G004250.1 Cma12g00425 304915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00425 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Cma12g00425 164 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cma12g00425 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Cma12g00425 164 SUPERFAMILY F1F0 ATP synthase subunit C 12 76 IPR035921 -
Cma12g00425 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 164 - -
Cma12g00425 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00425 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00425 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00425 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cma12g00425 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Cma12g00425 164 Gene3D - 10 161 IPR035921 -
Cma12g00425 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 2 164 - -
Cma12g00425 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cma12g00425 164 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00287 Cma12g00425 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00287 Cma-Chr5:1233061 Cma12g00425 Cma-Chr12:2202888 8.28E-112 dispersed
Cma12g00424 Cma-Chr12:2199287 Cma12g00425 Cma-Chr12:2202888 7.52E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00425 K02155 - aof:109825900 287.345