Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g00425 | ATGTCAACCTTCAGCGGCGATGAAACGGCGCCCTTCTTTGGCTTTCTAGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCCGCTTATGGGACGGCAAAGAGCGGTGTTGGAGTTGCGTCGATGGGAGTGATGAGACCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACTGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGCTACGCGCATTTGTCCTCTGGTTTGGCTTGTGGTCTCGCCGGTCTCTCTGCTGGCATGGCTATCGGGATCGTCGGCGATGCCGGCGTTAGGGCCAATGCACAACAGCCTAAGCTTTTTGTTGGGATGATTCTCATTCTAATTTTTGCCGAAGCGCTTGCCCTTTATGGACTTATCGTCGGTATTATTCTCTCCTCCCGAGCTGGTCAGTCGAGAGCTGATTAA | 495 | 51.31 | MSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2202888 | 2204653 | + | CmaCh12G004250.1 | Cma12g00425 | 304915 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g00425 | 164 | CDD | ATP-synt_Vo_c_ATP6C_rpt2 | 88 | 155 | - | - | |
Cma12g00425 | 164 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 12 | 120 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
Cma12g00425 | 164 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 12 | 79 | - | - | |
Cma12g00425 | 164 | SUPERFAMILY | F1F0 ATP synthase subunit C | 12 | 76 | IPR035921 | - | |
Cma12g00425 | 164 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 2 | 164 | - | - | |
Cma12g00425 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 29 | 53 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cma12g00425 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 55 | 79 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cma12g00425 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 106 | 132 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cma12g00425 | 164 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 133 | 156 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cma12g00425 | 164 | SUPERFAMILY | F1F0 ATP synthase subunit C | 86 | 155 | IPR035921 | - | |
Cma12g00425 | 164 | Gene3D | - | 10 | 161 | IPR035921 | - | |
Cma12g00425 | 164 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 2 | 164 | - | - | |
Cma12g00425 | 164 | Pfam | ATP synthase subunit C | 16 | 75 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Cma12g00425 | 164 | Pfam | ATP synthase subunit C | 96 | 154 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g00287 | Cma12g00425 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00287 | Cma-Chr5:1233061 | Cma12g00425 | Cma-Chr12:2202888 | 8.28E-112 | dispersed | |
Cma12g00424 | Cma-Chr12:2199287 | Cma12g00425 | Cma-Chr12:2202888 | 7.52E-111 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g00425 | K02155 | - | aof:109825900 | 287.345 |