Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00426 ATGGCGGAAGAAATCAGTAAGGCCGACCTCGGAACTTCCACTTCTATCGCAGATAGCACGAAATCGAGATCTTTTTGGCCCTCTAGTCTCCGTTGGATTCCCACTTCTACCGATCATATCATCGCCGCCGAGAAGCGGCTTCTCTCTCTTGTCAAAACTCCATATGTCCAAGAACGAGTTAACATTGGTTCTGGTCCACCAGGATCGAAAGTTAGATGGTTTCGTTCTGCGAGTAATGAGCCTAGATTTATCAACACCGTGACATTCGACAGCAAAGCTGATTCTCCGACACTTGTAATGATCCATGGTTATGCTGCTTCTCAAGGATTCTTCTTCCGGAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTCATCGCCATCGATCAACTAGGGTGGGGAGGATCTAGCAGGCCTGATTTTACATGCAAAAGCACAGAAGGTTCTGATTATTATATTGGTGATGCAGAAACTGAAGCATGGTTTATAGACTCTTTTGAGGAATGGCGAAAAGCAAAAAACATCAGCAGTTTTATCTTACTTGGGCACTCATTTGGTGGATACGTGGCGGCTAAATATGCTCTCAAGCATCCTGAGCACATCAAACACCTGATTTTAGTAGGACCTGCGGGATTTTCTTCTGAGTCAGATGCTAAGTCTGATGAGACGATTACCCGGTTTAGAGCTACTTGGAAAGGAGCGATTTTGAGTCATTTGTGGGAGTCAAATTTTACTCCACAGAAGCTCGTGAGAGGTTTGGGCCCCTGGGGTCCTAATCTTGTTCACAAATATACAAGTGCTAGATTCGGGACATACTCAATCGGGGACATATTGAATGATGAAGAATCCAGATTGTTATCAGGTGCTCAAGAAGCTCGCAAGAGTATGAAGACACCGTGCGAAATATTACGGGTCCCTCAGGCTGGGCACTTTGTGTTCATAGACAACCCTACCAGTTTTCACTCGACAGTGTTCTACGCATGCCGGAGATTCCTCTCCCCCGACCCTGATAAAGACTCCTTGCCTGAAGAGGCAGAGACTCTAAATTATTCACCGGCGCTCACTGACGGACAAGAGGAGGCCTTAAGTTTGCTCCGCCATAAAATACTCTCTCCGACGGAAACAATGTTGAGCCAATCCACCACCGGTCTCCATAGCCGCTCACTCTTCACATTTCCACGACGGGTCAATCACTCCGGCATCGGTAGAGCCTCCGTGACGTGCGCCGCTAGCAAATGGGCCGAGCGACTACTCGGGGACTTTCAATTCCTCTCCGATTCCTCCTCCTCCGACCATTCCCATTCTCTCTCCTCTTCCACTGTCACTCTCTCTCCTTCTTTCCCTCCCCCAATTGCCTCCCCCGAGCGCCAAGTTACCATCCCCATCGATTTCTATCGGGTTCTTGGAGCCGAGACGCATTTTCTTGGGGATGGGATTAGGAGAGCGTATGAAGCTAGAGTTTCGAAGCCGCCGCAGTACGGGTTTAGCCAGGAGACTCTGATAAATCGCCGGCAGATTCTTCAGGCGGCGTGCGAAACTTTGGCGGACCATACATCGCGAAGAGAGTACAATCAAGGTCTTTCGGAAGATGAAGATGCTACCATTCTCACGCAAGTCCCTTTCGATAAGGTTCCTGGAGCTTTGTGCGTGTTGCAAGAAGCTGGAGAGACATCCCTGGTTCTTGAAATTGGAGAAAGGTTGCTCAGAGAAAGGTTGCCAAAGTCATTCAAGCAAGATATTGTCCTGGCCGTGGCTCTTGCTTATGTTGACATATCAAGGGATGCTATGGCATTAACTCCACCTGATTTTATTCAGGGTTGCGAAGTGCTCGAGAGGGCCTTGAAATTGTTGCAGGAGGAGGGTGCCAGTAGCCTTGCACCAGATTTGCTTGCACAAATTGATGAGACATTGGAAGAGATCACACCTCGATGTGTTCTCGAACTCTTGACTTTACCTCTTGGTGACGAGTGGCGAACGAGAAGGGAAGAGGGTCTTCATGGAGTGCGGAATATTCTGTGGGCTGTTGGAGGAGGAGGAGCAACAGCTATTGCTGGTGGATTCACCCGTGAAGATTTTATGAACGAGGCATTTGAACGAATGACAGCATCTGAGCAGGTTGATCTCTTTGTAGCTACACCAACAAATATTCCAGCAGAAAGTTTTGAAGTCTATGGAGTCGCACTCGCACTCGTGGCACAAGCCTTTGTTGGTAAAAAACCGCACCTTATCCAAGATGCTGACAACCTCTTCCAACAGCTTCAGCAAACGAAAGAAGCTGTTGTTGGGACTGCTGGGACAGCATATGCACCATGCGAGGTTGATTTTGCTCTTGAGAGGGGGCTATGTTCCCTACTTAGTGGCGACCTCGATGGGTGTCGATCATGGCTGGGCTTAACCAGTGAAAATTCACCTTACAGAAATCCAGCTATTGTAGATTTTATCCTTGAGAATTCAAAGGGTGATTATGAAAATGATCTTCCAGGGCTATGTAAACTGTTGGAGACATGGTTGGCAGAAGTGGTGTTCTCCAGATTTAGAGACACACATAATATTTATTTTACTCTTGGAGATTACTATGATGATCCTACTGTTCTGAAGCACTTAGAGAAACTGGAAGGAGTTAATGGCTCACCCCTAGCTGCTGCAGCAGCTATAGTGAAGATTGGTGCTGAGGCTACTGCAGTTCTAGACCATGTGAAGTCCAGTGCAATTCAAGCACTGCGGAAGGTGTTTCCACTCAGTCAGAACAGTTCTAGGCGTGAGGCCGATGCAGAAATGGAATATCCTTTTCCTGCTGTAAGTAGTCAGGTGCCTTTAGTGAGCTTTGATGAGAATGAACGTACTAACTTACCTGAGGTTTCTGAGAGTGCTAAAGCTGGTGAAAAACCTATTGCTGATGAAATTAAAGATGCAAGTGTGAAGATCATGTGTGCTGGTGTGGCAGTTGGGTTGCTGACTTTGGCTTGTTTGAAATTTTTACCTGCTAGAAATAGCACAACTGCTGTACTTAATGAAGCTGGGGCATCCACTACCAGTATGGCATCTGAAGTTGAGTCAAGCGCGGAACCATCTAGAATGGATGCACGGATTGCAGAAGCTCTAATTTTAGATGGTGAGATGTTGAAGATTTGGACGGATCGTGCATCCGAAATTGCAGAACTTGGTTGGTTCTATGACTACACCCTCTCAAATCTGACCATTGACAGTGTAACGGTATCTTTAGATGGTCGGCGTGCCGTGGTCGAAGCAACTCTCGAAGAATTAGCCCATCTCATTGATGTAGGCCACCCAGAACACAACGATTCCAACAGAAAAACTTATACAACAAGGTATGAGATGTCATATTCCAATTCTGGATGGAAGATTACCAAAGGTGCTGTTCTTGAATCATAA 3390 46.87 MAEEISKADLGTSTSIADSTKSRSFWPSSLRWIPTSTDHIIAAEKRLLSLVKTPYVQERVNIGSGPPGSKVRWFRSASNEPRFINTVTFDSKADSPTLVMIHGYAASQGFFFRNFDALASRFRVIAIDQLGWGGSSRPDFTCKSTEGSDYYIGDAETEAWFIDSFEEWRKAKNISSFILLGHSFGGYVAAKYALKHPEHIKHLILVGPAGFSSESDAKSDETITRFRATWKGAILSHLWESNFTPQKLVRGLGPWGPNLVHKYTSARFGTYSIGDILNDEESRLLSGAQEARKSMKTPCEILRVPQAGHFVFIDNPTSFHSTVFYACRRFLSPDPDKDSLPEEAETLNYSPALTDGQEEALSLLRHKILSPTETMLSQSTTGLHSRSLFTFPRRVNHSGIGRASVTCAASKWAERLLGDFQFLSDSSSSDHSHSLSSSTVTLSPSFPPPIASPERQVTIPIDFYRVLGAETHFLGDGIRRAYEARVSKPPQYGFSQETLINRRQILQAACETLADHTSRREYNQGLSEDEDATILTQVPFDKVPGALCVLQEAGETSLVLEIGERLLRERLPKSFKQDIVLAVALAYVDISRDAMALTPPDFIQGCEVLERALKLLQEEGASSLAPDLLAQIDETLEEITPRCVLELLTLPLGDEWRTRREEGLHGVRNILWAVGGGGATAIAGGFTREDFMNEAFERMTASEQVDLFVATPTNIPAESFEVYGVALALVAQAFVGKKPHLIQDADNLFQQLQQTKEAVVGTAGTAYAPCEVDFALERGLCSLLSGDLDGCRSWLGLTSENSPYRNPAIVDFILENSKGDYENDLPGLCKLLETWLAEVVFSRFRDTHNIYFTLGDYYDDPTVLKHLEKLEGVNGSPLAAAAAIVKIGAEATAVLDHVKSSAIQALRKVFPLSQNSSRREADAEMEYPFPAVSSQVPLVSFDENERTNLPEVSESAKAGEKPIADEIKDASVKIMCAGVAVGLLTLACLKFLPARNSTTAVLNEAGASTTSMASEVESSAEPSRMDARIAEALILDGEMLKIWTDRASEIAELGWFYDYTLSNLTIDSVTVSLDGRRAVVEATLEELAHLIDVGHPEHNDSNRKTYTTRYEMSYSNSGWKITKGAVLES 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2206254 2216411 + CmaCh12G004260.1 Cma12g00426 304916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00426 1129 SUPERFAMILY Chaperone J-domain 460 527 IPR036869 -
Cma12g00426 1129 Gene3D alpha/beta hydrolase 43 324 IPR029058 -
Cma12g00426 1129 SUPERFAMILY alpha/beta-Hydrolases 86 323 IPR029058 -
Cma12g00426 1129 MobiDBLite consensus disorder prediction 1 20 - -
Cma12g00426 1129 MobiDBLite consensus disorder prediction 433 453 - -
Cma12g00426 1129 Pfam alpha/beta hydrolase fold 96 218 IPR000073 -
Cma12g00426 1129 Pfam ARC6-like, IMS domain 1034 1122 IPR025344 -
Cma12g00426 1129 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 398 1127 IPR044685 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00426 - - - csv:101212436 1248.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00286 Cma12g00426 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01189 Cma-Chr9:7535297 Cma12g00426 Cma-Chr12:2206254 3.01E-21 dispersed
Cma12g00426 Cma-Chr12:2206254 Cma15g01315 Cma-Chr15:8270288 2.08E-09 dispersed
Cma12g00426 Cma-Chr12:2206254 Cma05g00286 Cma-Chr5:1222353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007804 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00426 Cma_Chr12 FPKM 6.432271 6.358076 7.258977 7.152143 13.266329 13.079517 11.715895 13.175091 12.554565 13.025601