Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00427 ATGGAAGCCAAGGAGCCAATACAAGGAGTTATTCAAGCCTCCAATGGTCTAGAAGAGACGATTCGTGTTTCGATTAGGTTAAGGCCTTTGAACGAAAAGGAATTGACGAAGAACGATTCGTCCGATTGGGCATGTCTCAACAATAACTCCATCATATTTAGAAGTACTTTACCAGACCGAGCTATGTATCCCCAATCTTACACATTTGATAGAGTATTTGGATGTGACAGTACGACAAAGCAAGTTTATGAAGAAGGGGCTAAGGAAGTTGTTCTTTCAGTCGTCAATGGCATTAACTCAACAATTTTTGCATATGGGCAAACAAGCAGTGGAAAGACATACACCATGAATGGAATCACGGAGTATTCTGTGGCAGACATTTATAATTACATGGAGACGCATCAAGAAAGAGAATATGTGCTCAAGTTCTCAGCGATTGAGATATACAATGAAGCTGTGAGAGATCTCCTTAGCTTTGAAAATGTCCCACTTAGACTTCTTGATGATCCTGAGAAAGGAACAGTTGTTGAGAAACTTACAGAGGAGACATTGAAAGATAGGAACCATCTCCAAGAGCTTCTTTCCTTTTGTGAAGTTCAAAGAAAGATTGGGGAGACGACTTTGAATGAAGCTAGCTCCAGATCCCATCAAATCTTAAGACTAACAATTGAAAGCTCAGCTCGGAAATTTAAGAAGTCAGAAAGTGGGAGCAGTCTGACGGCTACAGTGAATTTTGTTGATCTTGCGGGAAGTGAACGAGCTTCCCAAACAATGTCGGCTGGTACAAGGCTCAAAGAAGGTTGCCATATAAACCGGAGTTTGCTGTCCCTGGGAACTGTTATTCGAAAATTAAGCAAAGGAAGGACTGGGCACGTACCTTATAGAGATTCCAAGTTAACACGCATACTGCAGAATTCTCTAGGGGGGAATGGTCGAACAGCTATCATTTGTACTATGAGTCCTGCACGTAGCCATGTTGAACAATCAAGAAACACATTGCTATTTGCTACTTGTGCAAAGGAGGTGAGTACAAACGCACATGTAAATGTGGTAGTGTCAGATAAGGCATTGGTGAAGCAGTTGCAGAAGGAATTGGCTAGACTTGAGAGTGAGATGAAGAACATAAAACCACTTCCTGTCAAAGGTGATTCTAATTCCTTGTTGAAAGAGAAGGAAATTCTAATTGAGCAGATGGACAAAGAGATCAAGGAATTGACTCGGCAGCGTGATCTTGCTCAGTATCGTATCGAGAATTTATTGCATTCGGTTGGAGAAGATAGGATATTTAAGCGAAGTGAAAGCACAGTCCAAATAGTGCCGGAAACAATGTCGGAAACAATGTCGGAAACAGTGCCGGAAACAATGTCGGAAACAGTGCCAGCAACAGTGCCGGATCTGGTTGAGCTAGATCTAGATCTACGTTCTGATGACTCAAGTCTCAAGACTTTTGACACATTTAATGGACAAGGACAAGAAGAGAATAGCCCTCACAAGGTTAATCCTCTATTTTCTACGAGTCATGATGATGATTTTCTATTAGATAGCAGCACTCCTGAGTTGGCTGGACCTTATCCTTATAACAACTGGGAAGAGGTTGCTCAACGTGTTCGAGCAAATTCCGAAGATAGTTATAAGGATGTTCAATGCATTGAGCTGGAGGAATCAAACCAAACACCAAATGAAAATGTTGAGTTGGCTTTAGCTAGATTGGAAGACAATGAAGGACAGATGATCAGTACTTCTCGCACTAATCAAGTGACATCCCCACAAAGGAAGAACAAGGAGATAGTTACAATCAACAAAGATTATGTTAGCGGTGGTTTTATGCCGAACACTGCGGAGCCGAAGAGAACATTAAATTGTATTGTAAATTTTTATCCTGCTGAGCAATCATTCAGCTCAATTGAAGCAGCAAAAGATCGGTTTCAAAACTTAAAGTTGACCAGAAGCAAAAGTTGTTTGACTGTTCTAATGGAACTCCCACCTTCTACTTGGGTTGAGAAGCCAGAGACGGATAAGAAAGCTCAGCACAATGGATCTGAAATAAACTTCTCTGGACTAGCAGAAGGTAGTCGGAGAAAGCGCGGTTTAAGCTGCGGAAATTTAGAAACCGAGGAGTCACAATCGGTATGTAATCGTCCTTCGGAAGATAAGGCTTTGGAAATAATAGAAGAAGATGACGATGATAATACGAGTGTTCTCAACTTCGCTACTGGGAAAAAAGGAAAGAGCAAAAATCGGTTAAGGAAGCGATCAACCCACGGTTCGCGGCTGGGGAGGACCCCCAAGAGGGAAGAAGCTAAAGAAACCACACAAGATGTTGGATTGGAGGAGGAACAAGATTTTCAATCGCATTCAGATTGGCTTTTGGAGTTCCAAGGTCAACAGAGAGACATAATTGAGCTTTGGGATGCATGCAACGTACCATTGGTTCACAGATCTTATTTCTTCATCCTTTTCAAAGGAGACCCTTCAGACGCAGTATACATGGAAGTAGAGCTTAGAAGGTTGTTCTTTATAAGGGAAGCCATGTCTCGATCAACCAATGGATTTGGAAGGAATGACGCCATCACACAAGCTTCGAGCTTGAAGACTCTAAACCGAGAGAGAGAGATGTTGGTGAAGCGAATTAAGAAGAAGTTCTCAGTGAAAGAAAGAGACACCCTTTACAAGAAGTGGGGAATAGACTTGAAGACAAAGCAAAGAAGCATACAATTGGCAAAAAAGCTATGGACAAGAACAAAGGACTTCGACCATATACACGAGAGTGCAGCCCTTGTGGCCAAGCTGCTTGGATTTGTGGAACCATCGCAGGTGTCAAGGGAGATGTTTGGGCTGTCCTTCTCGCTACAATCATTGGATCAGAGATCTTTTCCATGGAAAAGGAATATGTCTCTTCCATTTTGA 2907 42.04 MEAKEPIQGVIQASNGLEETIRVSIRLRPLNEKELTKNDSSDWACLNNNSIIFRSTLPDRAMYPQSYTFDRVFGCDSTTKQVYEEGAKEVVLSVVNGINSTIFAYGQTSSGKTYTMNGITEYSVADIYNYMETHQEREYVLKFSAIEIYNEAVRDLLSFENVPLRLLDDPEKGTVVEKLTEETLKDRNHLQELLSFCEVQRKIGETTLNEASSRSHQILRLTIESSARKFKKSESGSSLTATVNFVDLAGSERASQTMSAGTRLKEGCHINRSLLSLGTVIRKLSKGRTGHVPYRDSKLTRILQNSLGGNGRTAIICTMSPARSHVEQSRNTLLFATCAKEVSTNAHVNVVVSDKALVKQLQKELARLESEMKNIKPLPVKGDSNSLLKEKEILIEQMDKEIKELTRQRDLAQYRIENLLHSVGEDRIFKRSESTVQIVPETMSETMSETVPETMSETVPATVPDLVELDLDLRSDDSSLKTFDTFNGQGQEENSPHKVNPLFSTSHDDDFLLDSSTPELAGPYPYNNWEEVAQRVRANSEDSYKDVQCIELEESNQTPNENVELALARLEDNEGQMISTSRTNQVTSPQRKNKEIVTINKDYVSGGFMPNTAEPKRTLNCIVNFYPAEQSFSSIEAAKDRFQNLKLTRSKSCLTVLMELPPSTWVEKPETDKKAQHNGSEINFSGLAEGSRRKRGLSCGNLETEESQSVCNRPSEDKALEIIEEDDDDNTSVLNFATGKKGKSKNRLRKRSTHGSRLGRTPKREEAKETTQDVGLEEEQDFQSHSDWLLEFQGQQRDIIELWDACNVPLVHRSYFFILFKGDPSDAVYMEVELRRLFFIREAMSRSTNGFGRNDAITQASSLKTLNREREMLVKRIKKKFSVKERDTLYKKWGIDLKTKQRSIQLAKKLWTRTKDFDHIHESAALVAKLLGFVEPSQVSREMFGLSFSLQSLDQRSFPWKRNMSLPF 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2217066 2223229 - CmaCh12G004270.1 Cma12g00427 304917

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00427 968 MobiDBLite consensus disorder prediction 742 757 - -
Cma12g00427 968 Pfam Domain of unknown function (DUF3490) 791 950 IPR021881 -
Cma12g00427 968 PANTHER KINESIN-LIKE PROTEIN KIN-7J 16 965 - -
Cma12g00427 968 MobiDBLite consensus disorder prediction 731 779 - -
Cma12g00427 968 CDD KISc_CENP_E 20 342 - -
Cma12g00427 968 SMART kinesin_4 18 350 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 Coils Coil 388 422 - -
Cma12g00427 968 MobiDBLite consensus disorder prediction 668 689 - -
Cma12g00427 968 ProSiteProfiles Kinesin motor domain profile. 20 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 MobiDBLite consensus disorder prediction 758 779 - -
Cma12g00427 968 Pfam Kinesin motor domain 26 342 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma12g00427 968 PANTHER CENTROMERE PROTEIN E 16 965 - -
Cma12g00427 968 Coils Coil 351 378 - -
Cma12g00427 968 ProSitePatterns Kinesin motor domain signature. 241 252 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma12g00427 968 Gene3D Kinesin motor domain 11 373 IPR036961 -
Cma12g00427 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 376 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00427 K11498 CENPE; centromeric protein E - csv:101212680 1478.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00285 Cma12g00427 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00745 Cma-Chr4:3788849 Cma12g00427 Cma-Chr12:2217066 0 dispersed
Cma12g00427 Cma-Chr12:2217066 Cma16g00605 Cma-Chr16:3116190 0 dispersed
Cma11g01073 Cma-Chr11:5881830 Cma12g00427 Cma-Chr12:2217066 8.65E-44 wgd
Cma12g00427 Cma-Chr12:2217066 Cma19g00692 Cma-Chr19:7154378 0 wgd
Cma12g00427 Cma-Chr12:2217066 Cma02g00369 Cma-Chr2:1845006 1.03E-80 wgd
Cma12g00427 Cma-Chr12:2217066 Cma05g00285 Cma-Chr5:1216591 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1046 . . . . . . . . Cmo05g00291 Cmo12g00378 . . . Car12g00404 . . Cpe07g00383 Bhi04g00228 . . . . . . Cla08g01443 Cam08g1924 Cec08g1499 Cco08g1635 Clacu08g1614 . Cre08g1400 . . Cone17ag1382 . . . . Cme03g01903 . Blo18g00788 . . . . Bma01g00738 . . . . Cma12g00427 Cma05g00285 Car05g00235 . Cpe11g00236 . . . . . . . . . . . . . . . Lsi08g01346 Csa02g02109 Chy03g01407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008666 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00427 Cma_Chr12 FPKM 0.25055 0.0 0.0 0.109063 0.635851 0.530554 0.520231 3.842063 3.758858 3.501119