Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00429 ATGTACGATCATTCTTATAATATTCTGTTCTTCCCTGATTTCTATTGCTCCGGCGAAGTTTCATCTAATCTTGATATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGACGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATCTCTGTGACCATCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTCCTTCTAACTGGGATTAAGCTTTCCACCACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTCTGATCACAAATCAAAGGGTTCAGTCAAGAAACCGACCGTTGTTCCTGCTGCTCCAGTAGGATGCACATCAAGTGTTTGCGTTAATGCCTCAACCAACATACCTCCAGCAGTGGCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGATGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGTGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATTTATGGTTCAGGATTGACGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGTTTGGGCAGATGACTGTTTCACTGTTCCTCAGATTACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA 996 48.9 MYDHSYNILFFPDFYCSGEVSSNLDMKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGSDHKSKGSVKKPTVVPAAPVGCTSSVCVNASTNIPPAVAMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFVEGDFNSGLSPSERLELWVPQGPIYGSGLTMNSGVKDTKDLVVNSSKVNRVWADDCFTVPQITSTTAPSAGFKRSRSFWYNNH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2230092 2232433 - CmaCh12G004290.1 Cma12g00429 304919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00429 331 SMART bboxneu5 78 125 IPR000315 GO:0008270
Cma12g00429 331 SMART bboxneu5 25 72 IPR000315 GO:0008270
Cma12g00429 331 PANTHER B-BOX ZINC FINGER PROTEIN 22 26 325 - -
Cma12g00429 331 PANTHER B-BOX ZINC FINGER PROTEIN 19 26 325 - -
Cma12g00429 331 ProSiteProfiles Zinc finger B-box type profile. 78 125 IPR000315 GO:0008270
Cma12g00429 331 ProSiteProfiles Zinc finger B-box type profile. 25 72 IPR000315 GO:0008270
Cma12g00429 331 Gene3D Classic Zinc Finger 26 119 - -
Cma12g00429 331 MobiDBLite consensus disorder prediction 145 163 - -
Cma12g00429 331 Pfam B-box zinc finger 79 121 IPR000315 GO:0008270
Cma12g00429 331 MobiDBLite consensus disorder prediction 139 166 - -
Cma12g00429 331 CDD Bbox1_BBX-like 30 72 - -
Cma12g00429 331 CDD Bbox1_BBX-like 82 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00429 - - - mcha:111013937 469.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01945 Cma12g00429 CCT
Cma01g01945 Cma12g00429 ECH
Cma05g00283 Cma12g00429 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00429 Cma-Chr12:2230092 Cma17g00607 Cma-Chr17:5142890 8.43E-38 dispersed
Cma01g01945 Cma-Chr1:12606514 Cma12g00429 Cma-Chr12:2230092 4.37E-59 wgd
Cma11g01083 Cma-Chr11:5944389 Cma12g00429 Cma-Chr12:2230092 2.44E-53 wgd
Cma12g00429 Cma-Chr12:2230092 Cma19g00687 Cma-Chr19:7115841 4.28E-55 wgd
Cma12g00429 Cma-Chr12:2230092 Cma20g00817 Cma-Chr20:3862961 1.23E-48 wgd
Cma12g00429 Cma-Chr12:2230092 Cma05g00283 Cma-Chr5:1210628 1.13E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1041 Blo01g01583 . Bda01g00506 . Bpe02g00365 . . . Cmo05g00289 Cmo12g00380 Cma01g01945 . Car01g01519 Car12g00406 . . Cpe07g00385 Bhi04g00162 . . . . . . Cla08g01445 Cam08g1926 Cec08g1501 Cco08g1638 Clacu08g1616 . Cre08g1403 Cone4ag1948 . Cone17ag1378 Cone20ag0105 . . . Cme03g01907 . Blo18g00789 Bda08g01236 Bda01g01521 Bpe02g01717 Bpe05g00126 Bma01g00739 Bma05g00152 . Cmo01g02006 . Cma12g00429 Cma05g00283 . . Cpe11g00234 Cpe02g00094 . . . . . . . Cla11g00377 Cam11g0424 Cec11g0420 Cco11g0413 Clacu11g0546 Cmu11g0403 Cre11g0890 Lsi08g01348 Csa02g02104 Chy03g01411 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004397 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 2 3 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35981 PF00643 zf-B_box 1.50E-05 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00429 Cma_Chr12 FPKM 18.173321 20.633671 1.496051 1.478987 1.87035 1.899308 2.128378 0.799517 0.950249 0.798145