Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00429 | ATGTACGATCATTCTTATAATATTCTGTTCTTCCCTGATTTCTATTGCTCCGGCGAAGTTTCATCTAATCTTGATATGAAGATTCAGTGTGATGTCTGTGAAAAAGGCGACGCGTCAGTGTTCTGCACGGCGGATGAGGCGGCGCTTTGTAATCTCTGTGACCATCGTGTCCACCATGCCAATAAGCTCGCTTCGAAGCACCGCCGCTTCTCTCTGCTCCGCTCTGCTGCAGCGGAGGCACCTGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTTTGTCAACAGGATAGAGCGATTCTGTGTAGAGAGTGCGATGATCCAATTCATTCGGCTAATGAACTCACTATGAAACACGATAGGTTCCTTCTAACTGGGATTAAGCTTTCCACCACCGCTGCTCTGTACGCGCCGCCTCCCTCCGACGAGAAACCGATCAAAACTGGTCATCGTACTGGTTCTGATCACAAATCAAAGGGTTCAGTCAAGAAACCGACCGTTGTTCCTGCTGCTCCAGTAGGATGCACATCAAGTGTTTGCGTTAATGCCTCAACCAACATACCTCCAGCAGTGGCCATGAACAAGGGCGGCGGAGGTCAGATTCCGACAGGAGGCGGTGGCTCAGCCAGTAGCATATCGGAATATTTGATGGAGACACTTCCTGGATGGCACTTTGAGGATTTACTCGATTCCTCTGTTCCTCCCCCTTTTATGGAGTGTGAAGGGTTGGGATTACCATTTGTGGAAGGTGATTTCAACAGTGGCCTTTCACCATCGGAGCGTTTGGAGCTTTGGGTCCCTCAGGGGCCGATTTATGGTTCAGGATTGACGATGAACAGTGGGGTGAAGGACACAAAGGATTTGGTAGTAAACTCATCAAAAGTCAATAGAGTTTGGGCAGATGACTGTTTCACTGTTCCTCAGATTACAAGTACAACAGCCCCATCTGCAGGCTTTAAGCGATCCAGATCTTTTTGGTATAACAATCACTAA | 996 | 48.9 | MYDHSYNILFFPDFYCSGEVSSNLDMKIQCDVCEKGDASVFCTADEAALCNLCDHRVHHANKLASKHRRFSLLRSAAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLLTGIKLSTTAALYAPPPSDEKPIKTGHRTGSDHKSKGSVKKPTVVPAAPVGCTSSVCVNASTNIPPAVAMNKGGGGQIPTGGGGSASSISEYLMETLPGWHFEDLLDSSVPPPFMECEGLGLPFVEGDFNSGLSPSERLELWVPQGPIYGSGLTMNSGVKDTKDLVVNSSKVNRVWADDCFTVPQITSTTAPSAGFKRSRSFWYNNH | 331 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2230092 | 2232433 | - | CmaCh12G004290.1 | Cma12g00429 | 304919 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00429 | 331 | SMART | bboxneu5 | 78 | 125 | IPR000315 | GO:0008270 | |
| Cma12g00429 | 331 | SMART | bboxneu5 | 25 | 72 | IPR000315 | GO:0008270 | |
| Cma12g00429 | 331 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 26 | 325 | - | - | |
| Cma12g00429 | 331 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 26 | 325 | - | - | |
| Cma12g00429 | 331 | ProSiteProfiles | Zinc finger B-box type profile. | 78 | 125 | IPR000315 | GO:0008270 | |
| Cma12g00429 | 331 | ProSiteProfiles | Zinc finger B-box type profile. | 25 | 72 | IPR000315 | GO:0008270 | |
| Cma12g00429 | 331 | Gene3D | Classic Zinc Finger | 26 | 119 | - | - | |
| Cma12g00429 | 331 | MobiDBLite | consensus disorder prediction | 145 | 163 | - | - | |
| Cma12g00429 | 331 | Pfam | B-box zinc finger | 79 | 121 | IPR000315 | GO:0008270 | |
| Cma12g00429 | 331 | MobiDBLite | consensus disorder prediction | 139 | 166 | - | - | |
| Cma12g00429 | 331 | CDD | Bbox1_BBX-like | 30 | 72 | - | - | |
| Cma12g00429 | 331 | CDD | Bbox1_BBX-like | 82 | 125 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01945 | Cma12g00429 | CCT | |
| Cma01g01945 | Cma12g00429 | ECH | |
| Cma05g00283 | Cma12g00429 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma12g00429 | Cma-Chr12:2230092 | Cma17g00607 | Cma-Chr17:5142890 | 8.43E-38 | dispersed | |
| Cma01g01945 | Cma-Chr1:12606514 | Cma12g00429 | Cma-Chr12:2230092 | 4.37E-59 | wgd | |
| Cma11g01083 | Cma-Chr11:5944389 | Cma12g00429 | Cma-Chr12:2230092 | 2.44E-53 | wgd | |
| Cma12g00429 | Cma-Chr12:2230092 | Cma19g00687 | Cma-Chr19:7115841 | 4.28E-55 | wgd | |
| Cma12g00429 | Cma-Chr12:2230092 | Cma20g00817 | Cma-Chr20:3862961 | 1.23E-48 | wgd | |
| Cma12g00429 | Cma-Chr12:2230092 | Cma05g00283 | Cma-Chr5:1210628 | 1.13E-144 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35981 | PF00643 | zf-B_box | 1.50E-05 | No_clan | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00429 | - | - | mcha:111013937 | 469.544 |