Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00430 ATGGCTGAATTGTTCTATGTAGGAGGAAGAGAAGAAGGCCCACCAAACAAAGAACAAGAACAACAGAAACAAACACAACCCACCTTGTTTATGTACCGAAACGATCAACAAATCCACCACAAAGGCTTCGAAATATGGCCTCCACATTACCAAACCCACTTCTCCTCCGCCGTTGGTCAGAGCCACCGCACCGACTCCGATCACCCCTCCAGATCCGCCTTCACCGCCACCAGACCCGCCGCAGCCATTGCCGGAGGCATCAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGTGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGAGGGTTTCACTGTCAGACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTAAACGCCGTGAACGGCAGTTTCGCGGTGGGGATAATTCCAAACGACTTAGAGAAACCCAATCCGCCACCGCCACCGCCACCCTTCATTTGCCCTCCTCCTTCACCTCAGAATTGGAGAAATTTCCATCGGAAGTGAACTCACCGGCGGTGTTTCGGTGTGTGAAAGTAAGCGCGATGGACGATGAGGATGAAGAGTTTGCATATCAGACGGCTGTGAATATCGGAGGCCACGTGTTCAAAGGAATTCTCTACGATCAAGGCTCTGAAGTCCATTACACCGCCGGCGAGAGCTCCTCCGGCCACGTAGGAGATGGATCAGTACACCCACTTAACTTAATTGCTGGACCCTCCAACGCCGCCGCCGCTTCCACCACTACCTCGGCTGCAACCAGTTCCAACCCCACCGCCACCGCCGCCGCCGTCGCATCGTTGCTTGACCCTCCTATATATCCAGCTCCTCTTAATGCATTTATAGCTGGTACGCAGTTCTTCCCACCCTCTAGATCATGA 894 53.58 MAELFYVGGREEGPPNKEQEQQKQTQPTLFMYRNDQQIHHKGFEIWPPHYQTHFSSAVGQSHRTDSDHPSRSAFTATRPAAAIAGGINCQDCGNQAKKDCAYLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQFRGGDNSKRLRETQSATATATLHLPSSFTSELEKFPSEVNSPAVFRCVKVSAMDDEDEEFAYQTAVNIGGHVFKGILYDQGSEVHYTAGESSSGHVGDGSVHPLNLIAGPSNAAAASTTTSAATSSNPTATAAAVASLLDPPIYPAPLNAFIAGTQFFPPSRS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2242402 2243374 + CmaCh12G004300.1 Cma12g00430 304920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00430 297 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g00430 297 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 294 - -
Cma12g00430 297 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 168 215 IPR006511 -
Cma12g00430 297 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Cma12g00430 297 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 88 130 IPR006510 -
Cma12g00430 297 Pfam Domain of unknown function (DUF702) 86 217 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01939 Cma12g00430 CCT
Cma01g01939 Cma12g00430 ECH
Cma05g00281 Cma12g00430 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00430 Cma-Chr12:2242402 Cma19g00283 Cma-Chr19:2141068 8.65E-72 dispersed
Cma01g01939 Cma-Chr1:12590607 Cma12g00430 Cma-Chr12:2242402 9.81E-85 wgd
Cma12g00430 Cma-Chr12:2242402 Cma03g00708 Cma-Chr3:5754845 3.42E-73 wgd
Cma12g00430 Cma-Chr12:2242402 Cma05g00281 Cma-Chr5:1203604 5.62E-124 wgd
Cma12g00430 Cma-Chr12:2242402 Cma07g00452 Cma-Chr7:1973447 8.19E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35982 PF05142 DUF702 6.10E-56 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00430 - - cmos:111454480 506.138