Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00431 ATGGATCTACTGCGATCGGAGCCGATGCAGTTTGTGCAGCTGATCATTCCTAATGAATCGGTGCACCGGACGCTTTCCTATCTCGGCGACCTCGGTCTCTTCCAATTCAACGATCTCAATGCATCTAGAAGTCCATTCCAGCGAACGTATGCTGCTCAGATTAAAAGATGTGGGGAAATGGCTCGCAAGCTACGGTTTTTTAGGGAGCAAATGGCAAGGGCTGGTTTATCTCCGTCATCAAATTCTCAAGCGGTTGCTGATTTTGATCTGGATAATTTGGAGGTTAAACTTGGAGAATTTGAGGCAGAATTGTTAGAGATAAATGGCAACAATGAGAAGTTACGACGCAATTATAGTGAGCTATTGGAATATAAGCTTGTACTTCAGAAGGTTGGGGAGTTTTTCCATATAGCTCAAAGCATAGCCGCAGCTCAGCAAAGAGAACTGGAAGTGCAACAAAACGGGGAAGGGTCCATTGACAGTCCTTTACTATTGGAACAAGAAATGACAACGGATTCAACGAAACAAGTTAAGCTAGGTTATATCAGTGGTCTAGTTCTGAGAGAAAAGTCAATGGCTTTTGAAAGGATTTTGTTCCGTTCAACTAGGGGCAATGTGCATCTAAGGCAAGCTGTGGTTGATGGTTCCGTCACTGATCCTGTATCTGGGGAGAAGGTCGAGAAAAATGTGTTTGTCATATTTTATTCCGGAGAGAGAGCAAAGAATAAAATTCTGAAAATAAGCGAAGCTTTTGGTGCAAACCGTTATCCATTCACTGATGACTTGGGCAAACAACTTCAGATGATTACAGAGGTGTCTGGAAAACTCTCTGAATTGAAGACTACCATTGATTTGGGGCAAGTGCACCGAAGTAAACTCTTGCAGATGATTGGCCATCAATATGAGCAGTGGAATCTTTTGGTAAAGAAGGAAAAGTCTGTTTACCACACTTTGAATATGCTCAGTGTTGACGTAACAAAGAAATGCCTTGTAGGTGAAGGTTGGTGTCCTGTTTTTGCAACAAATCAGATTCAAAGTGTGATCCAGAAGGCTACCTTTGACAGCAAATCACAGATTGAGGCTATCTTTCATGTTCTGCAAACGAAGGAAGCACCACCAACATATTTCCGCACAAACAAATTTACTTCTACATTTCAAGAAATTGTGGATGCATATGGGATTGCTAAGTATCAGGAAGCAAATCCTGGGGTCTACACGATTGTGACCTTTCCGTTCCTTTTTGCTGTAATGTTCGGAGATTGGGGCCATGGAATATGCTTGTTGCTGGCAACATTATATCTTATAATAAGGGAGAAGAAATTTTCCAGCCAGAAACTTGGAGATATCGTGGAAATGACTTTTGCGGGCCGTTATGTTATCATGATGATGGCACTTTTTTCAATCTACACAGGACTGATTTATAATGAATTTTTTTCTGTCCCATTTGAATTGTTTGGGCGTTCTGCATATGGTTGTCGTCATACTTCATGCAGGGATGCCACTACCATAGGTTTAATAAAGGTTCGTGATACATATCCATTTGGTGTGGATCCTAAGTGGCATGGCACTCGAAGTGAGTTACCTTTTCTCAACTCGTTGAAGATGAAGATGTCGATTCTACTGGGAGTTGCTCAAATGAATCTTGGAATTATATTGAGCTACTTCAATGCGAAATTCTTTGAAGAAAAAATTAACATCTGGTACCAATTTGTTCCGCAGATGATATTCTTGAACAGCTTATTCGGCTACCTCTCGCTTCTCATAATTGTAAAATGGTGCTCTGGATCTCAAGCTGATCTGTATCACGTAATGATATACATGTTCTTGAGTCCTACAGATGATCTAGGTGAAAATGAGCTTTTTCCAGGGCAGCAGTTTGTTCAGGTTCTTTTACTTTTGGCTGCCCTCACTGCCGTGCCATGGATGTTGCTTCCGAAGCCTTTTCTGTTGAGGAAACAGAATGCAGAAAGGCACCAAGGTCAATCCTACTCCCTACTTCACGGCACGGATGACAATCTTGAAACAAAACAGCACCACGGTTCCCCCAGCCACAATGACTTTGACTTCAGCGAGGTCTTTGTACACCAACTTATACATACCATAGAGTTCGTACTTGGTGCAGTTTCTAACACAGCATCTTATCTACGTCTATGGGCCCTCAGCCTAGCCCATTCGGAGTTGTCGAGCGTATTTTACGACAAGGTTCTACTCCTAGCTTGGGGGTTTAACAGTTGGAGCATCCGAATAATAGGAATAGCAGTTTTTATATGTGCAACTGTGGGAGTTTTACTAGTGATGGAAACTCTGAGCGCATTCCTACACGCCTTGAGGCTCCACTGGGTGGAGTTTCAGAACAAATTCTATGCAGGAGATGGATTCAAATTTTCCCCTTACTCCTTTTCTCTGCTTCGGGAGGAGGATGAGTGA 2427 42.36 MDLLRSEPMQFVQLIIPNESVHRTLSYLGDLGLFQFNDLNASRSPFQRTYAAQIKRCGEMARKLRFFREQMARAGLSPSSNSQAVADFDLDNLEVKLGEFEAELLEINGNNEKLRRNYSELLEYKLVLQKVGEFFHIAQSIAAAQQRELEVQQNGEGSIDSPLLLEQEMTTDSTKQVKLGYISGLVLREKSMAFERILFRSTRGNVHLRQAVVDGSVTDPVSGEKVEKNVFVIFYSGERAKNKILKISEAFGANRYPFTDDLGKQLQMITEVSGKLSELKTTIDLGQVHRSKLLQMIGHQYEQWNLLVKKEKSVYHTLNMLSVDVTKKCLVGEGWCPVFATNQIQSVIQKATFDSKSQIEAIFHVLQTKEAPPTYFRTNKFTSTFQEIVDAYGIAKYQEANPGVYTIVTFPFLFAVMFGDWGHGICLLLATLYLIIREKKFSSQKLGDIVEMTFAGRYVIMMMALFSIYTGLIYNEFFSVPFELFGRSAYGCRHTSCRDATTIGLIKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVAQMNLGIILSYFNAKFFEEKINIWYQFVPQMIFLNSLFGYLSLLIIVKWCSGSQADLYHVMIYMFLSPTDDLGENELFPGQQFVQVLLLLAALTAVPWMLLPKPFLLRKQNAERHQGQSYSLLHGTDDNLETKQHHGSPSHNDFDFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNSWSIRIIGIAVFICATVGVLLVMETLSAFLHALRLHWVEFQNKFYAGDGFKFSPYSFSLLREEDE 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2249053 2258969 + CmaCh12G004310.1 Cma12g00431 304921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00431 808 PIRSF ATP6V0A1 1 808 IPR026028 GO:0000220|GO:0046961
Cma12g00431 808 Coils Coil 90 117 - -
Cma12g00431 808 PANTHER VACUOLAR PROTON ATPASES 1 808 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma12g00431 808 Pfam V-type ATPase 116kDa subunit family 27 800 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cma12g00431 808 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 808 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00279 Cma12g00431 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00864 Cma-Chr2:5039469 Cma12g00431 Cma-Chr12:2249053 0 dispersed
Cma12g00431 Cma-Chr12:2249053 Cma20g00461 Cma-Chr20:2208366 0 dispersed
Cma05g00280 Cma-Chr5:1191411 Cma12g00431 Cma-Chr12:2249053 1.83E-14 transposed
Cma11g01088 Cma-Chr11:5976677 Cma12g00431 Cma-Chr12:2249053 0 wgd
Cma12g00431 Cma-Chr12:2249053 Cma19g00683 Cma-Chr19:7079317 6.84E-67 wgd
Cma12g00431 Cma-Chr12:2249053 Cma05g00279 Cma-Chr5:1187764 2.82E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00431 K02154 - csv:101209817 1445.25