Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00432 ATGGAGCGCCTCACTGTAATCGCTCTCTCGTTTGCCATTTTACTATCGGCGACGGTAGCTTACGGCGTCTCTTCCGACCAAATCAACGGCGTTGAAGACGACGATCTTCTGATTCGTCAAGTCGTATCTGGAGACGATGATCGTCTCTTAACAGCGGAGCAACACTTCCAGAACTTCAAACTCAAGTTTGGAAAGACCTACGCTACCGATGAGGAGCACGATTACAGGTTCCGTATCTTCAAGGCTAATCTCCGCAAAGCCAAGCGCCACCAGAAGCTCGATCCTGGCGCCATCCATGGCGTTACTCAGTTCTCCGATCTCACCGAAGACGAGTTCCGTAAAAATTTCGTTGGAGTAAATCGGCTCCGTCTTCCTGCCGATGCTCAGAAGGCGCCGATCCTTCCTACCGATAACCTAGCCTCCGACTTCGATTGGCGCGACCATGGTGCCGTCACGCCGGTCAAAAATCAGGGTTCTTGTGGCTCGTGCTGGTCTTTTAGCGCTGTTGGAGCGCTAGAAGGAGCTAATTTCTTGTCAACTGGAAAACTTGTTAGTTTGAGCGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAAGCTGGTGCATGCGACGCGGGGTGCAACGGGGGGCTAATGACCTCAGCTTTCGAGTACATTTTGAAAGCAGGTGGATTAGAGAGAGAGGAGGACTATCCTTACACTGGGAAGGATCGTGGCCCTTGCAAATTCCAAAATGCCAAAATCGCAGCCTCTGTATCCAACTTCAGTGTCATTTCTCTTGACGCCGACCAAATTGCAGCAAACTTGCTCAAGAATGGTCCTTTAGCAATTGGAATCAATGCGGCTTTCATGCAGACATACATGAAGGGAGTTTCGTGCCCATACATATGCTCTAAACGAAACCTAAATCATGGAGTACTGCTTGTAGGGTATGGATCTGCAGGCTATGCTCCAATACGGTTCAAGGAGAAGCCCTACTGGATCATAAAGAATTCTTGGGGAGAAAACTGGGGAGAAAATGGGTACTACTTAATCTGCAAGGGCAAAAATATCTGTGGAGTTGAGTCGATGGTCTCGTCCGTGGCTGCTACCCAAAACTGA 1110 49.37 MERLTVIALSFAILLSATVAYGVSSDQINGVEDDDLLIRQVVSGDDDRLLTAEQHFQNFKLKFGKTYATDEEHDYRFRIFKANLRKAKRHQKLDPGAIHGVTQFSDLTEDEFRKNFVGVNRLRLPADAQKAPILPTDNLASDFDWRDHGAVTPVKNQGSCGSCWSFSAVGALEGANFLSTGKLVSLSEQQLVDCDHECDPEEAGACDAGCNGGLMTSAFEYILKAGGLEREEDYPYTGKDRGPCKFQNAKIAASVSNFSVISLDADQIAANLLKNGPLAIGINAAFMQTYMKGVSCPYICSKRNLNHGVLLVGYGSAGYAPIRFKEKPYWIIKNSWGENWGENGYYLICKGKNICGVESMVSSVAATQN 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2259888 2262899 - CmaCh12G004320.1 Cma12g00432 304922

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00432 369 Pfam Papain family cysteine protease 140 363 IPR000668 GO:0006508|GO:0008234
Cma12g00432 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 329 348 IPR025661 -
Cma12g00432 369 PANTHER CYSTEINE PROTEASE RD19C-RELATED 34 365 - -
Cma12g00432 369 Pfam Cathepsin propeptide inhibitor domain (I29) 56 112 IPR013201 -
Cma12g00432 369 SUPERFAMILY Cysteine proteinases 52 363 IPR038765 -
Cma12g00432 369 Gene3D Cysteine proteinases 33 365 - -
Cma12g00432 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 157 168 IPR000169 -
Cma12g00432 369 SMART pept_c1 139 365 IPR000668 GO:0006508|GO:0008234
Cma12g00432 369 PRINTS Papain cysteine protease (C1) family signature 157 172 IPR000668 GO:0006508|GO:0008234
Cma12g00432 369 PRINTS Papain cysteine protease (C1) family signature 307 317 IPR000668 GO:0006508|GO:0008234
Cma12g00432 369 PRINTS Papain cysteine protease (C1) family signature 329 335 IPR000668 GO:0006508|GO:0008234
Cma12g00432 369 CDD Peptidase_C1A 143 364 IPR039417 -
Cma12g00432 369 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 34 365 - -
Cma12g00432 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 305 315 IPR025660 -
Cma12g00432 369 SMART Inhibitor_I29_2 56 112 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00432 K01373 CTSF; cathepsin F [EC:3.4.22.41] - csv:101210316 671.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00278 Cma-Chr5:1182597 Cma12g00432 Cma-Chr12:2259888 1.08E-28 dispersed
Cma12g00432 Cma-Chr12:2259888 Cma03g00959 Cma-Chr3:6826020 2.61E-64 dispersed
Cma11g01089 Cma-Chr11:5993034 Cma12g00432 Cma-Chr12:2259888 0 wgd
Cma12g00432 Cma-Chr12:2259888 Cma19g00681 Cma-Chr19:7076395 1.04E-61 wgd
Cma12g00432 Cma-Chr12:2259888 Cma02g00371 Cma-Chr2:1863574 0 wgd
Cma12g00432 Cma-Chr12:2259888 Cma20g00819 Cma-Chr20:3876090 0 wgd
Cma12g00432 Cma-Chr12:2259888 Cma05g00276 Cma-Chr5:1172907 8.77E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1031 . . . . . . . . . Cmo12g00384 . . . Car12g00409 . . Cpe07g00388 . . . . . . . Cla08g01449 Cam08g1934 Cec08g1508 Cco08g1647 Clacu08g1624 . Cre08g1410 . . Cone17ag1374 Cone20ag0108 . . . Cme03g01910 Blo17g00766 . . . . . . Bma05g00147 . . . Cma12g00432 . . . . . . . . . . . . . . . . . . . Lsi08g01353 Csa02g02101 Chy03g01414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00432 Cma_Chr12 FPKM 84.122414 96.975021 310.220001 314.964752 160.883011 161.234955 153.244141 193.752609 192.853348 190.51828