Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00435 ATGGCGGACACGGGCTCGGTCTCGAACAAGAGAATGTCGTGTTCGATCCCCGAGAGGTTCCAGCTCCACGCCGCCATGTTAGCCTTGCAATTCGGCTACGCTGGCTTCCATGTGGTCTCTAGAGCTGCCCTGAATATGGGCATTAGTAAACTCGTCTTCCCTGTCTATCGAAACGTCATCGCTTTGCTCCTCCTCCTTCCCTTTGCATATTTCATGGAAAAGAAGGATAGGCCTGCGCTTACTCTCAACTTTGTTCTTCAGTTCTTCCTCCTCGCTCTCGTTGGAATTACTGCAAATCAAGGGTTTTACTTGTTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCGGCCATTACTTTCCTCATGGCTGTACTTCTCCGGATCGAACAAGTTCGACTAAACCGGAAAGATGGGATAGCGAAGGTGGTGGGGACTCTATGCTGCGTGGCCGGAGCGACGGTGATCACATTATACAAAGGCCCCACCGTCTACAGCCCGGCGACGACAGTGACGGTGCAGAGCACGGCGGAGTCGGCGGGGATGCTGATGGGGCCGGGAATGTTCCCGTCACTAGGCGACGCAAAGGGCAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTGGTTCTACAAGCTCCGGTGCTGAAAAAATACCCGGCTCGACTCTCCGTCACGTCATTCACTTGCTTTTTTGGCCTCGTCCAATTCTTCATCATCGCTGCCGCGTTCGAGCGCGATGCTCAGGCTTGGCTCTTCCATTCCGGCGCCGAAGCCTTCAGCATTGTTTATGCGGGGGTTGTGGCTTCGGGGATAGCGTTCGCCGTACAGATATGGTGCATTGACAGAGGTGGTCCGGTCTTTGTGGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTAGCTTTGGGTGAAGAGTTCTACTTGGGAGGGATCATAGGGGCGGTGCTGATTATATCGGGACTGTACCTTGTGCTGTGGGGCAAGAGCGAAGAGAAGAAGCTCTTATTGGAACGGGCAGTAATCCAGTCTGCTCAGGACCATGTTACCAGTAGAACAAGCGGCCACATCAAGCCGTCTCTTAACCAGCCACTCCTGCATCCTACGGCTGAAAATGTTTGA 1182 53.3 MADTGSVSNKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFMEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAVLLRIEQVRLNRKDGIAKVVGTLCCVAGATVITLYKGPTVYSPATTVTVQSTAESAGMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLVQFFIIAAAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASLALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKLLLERAVIQSAQDHVTSRTSGHIKPSLNQPLLHPTAENV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2275723 2278727 + CmaCh12G004350.1 Cma12g00435 304925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00435 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cma12g00435 393 PANTHER WAT1-RELATED PROTEIN 14 372 - -
Cma12g00435 393 MobiDBLite consensus disorder prediction 372 393 - -
Cma12g00435 393 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Cma12g00435 393 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020|GO:0016021
Cma12g00435 393 PANTHER WAT1-RELATED PROTEIN 14 372 IPR030184 GO:0016021|GO:0022857
Cma12g00435 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 253 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00126 Cma12g00435 CCT
Cma09g00126 Cma12g00435 ECH
Cma05g00275 Cma12g00435 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00295 Cma-Chr11:1465378 Cma12g00435 Cma-Chr12:2275723 3.70E-144 dispersed
Cma12g00435 Cma-Chr12:2275723 Cma15g01342 Cma-Chr15:8415672 1.83E-82 dispersed
Cma09g00766 Cma-Chr9:3694122 Cma12g00435 Cma-Chr12:2275723 1.83E-75 transposed
Cma12g00435 Cma-Chr12:2275723 Cma05g00275 Cma-Chr5:1163426 0 wgd
Cma12g00435 Cma-Chr12:2275723 Cma09g00126 Cma-Chr9:547880 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00435 - - csv:101210562 711.835