Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00436 ATGGGTATTAGCATATTTCGTGCTGGATTTTCTGTTCTTGTAATTTTGGGTTTTGTAGTGTGCGATTTGGGCGTTTGTAATGGCGGATTCACGAGCGGTTACGTTAGGAATGACTATGTGGCGTCGGATATGCCGCTCGATAGCGATGTGTTCAAGCCTCCTCCCGGTAGAAATGCCGCACAACAGGTTCATATAACACAGGGGGATCTTGAGGGGAAGAGTGTAATTATCTCTTGGGTTACACCGGAGAAACCTGGTTCAAACAGAGTGGTTTATTGGGCTGAAAACAGTCCGATTAGAAACAAAGCTGAAGGCTCTGTTGTTTCCTATAAGTACTTCAACTATACATCTGGTTTCATTCATCACTGCACTATTGAGAATTTAGAGTACGACACGAAATACTTCTATGTGATCGGGTTCGGAAGAGATCTTGGCCAAACATATGATTCCAATAAAACACTTACACATTATGAATCAAACCCAACAAAAGGACAGGCTATGTTGTTCGTCGGGGACCTGTCGTATGCAGACCGTTATCCCTTCCACGACAACACCAGGTGGGACACATGGGGGAGGTTTGTAGAAAGAAGTGCAGCTTATCAACCTTGGATTTGGACTGCAGGGAATCATGAACTCGACTATGCTCCTGACATTGGTGAAACCGAACCGTTTAAGCCTTTTTTGCATCTCTACCGTGTCCCATATAATGCACTGGATGGCTCGTCTCCGCTTTGGTACTCCATTAAGAGAGCTTCTGCTCATATAATTGTCTTGTCCTCTTACTCATCTTATGTGAAAAGCAGCCCCCAATACAAATGGCTGCAGAGTGAGCTGCCAAGGGTAAACAGGGACCAGACTCCGTGGCTCATAGTTCTTATGCATACTCCAATGTACAGCAGTTATGTTCATCATTACATGGAGGGAGAAAGTATGAGAGTGGTCTTCGAGCCATGGTTCGTGAACTATAAAGTTGATGTTGTCTTTGCTGGTCATGTTCATGCCTACGAACGATCTGAACGAGTATCAAACATAGCATACAACATTGTAAATGGGTTATGTTCCCCAATGCGTAACCAAGATGCTCCAGTTTACATAACCATTGGAGATGGAGGTAACTCAGAAGGATTAGTAACAGAGATGACAGAACCACAGCCAAGATACTCAGCTTACCGTGAAGCCAGCTTCGGCCATGCCACACTGGACATAAAGAACAGAACTCACGCCTACTTCGCTTGGCATCGCAACCAAGATGAATATTCTGTGGAAGCTGATGCCCTATGGCTGCACAATCGTCAATGGATAGCTTCAAAATTGGCAAAATCTGCTCCGGTGAGTCACCTTTCATCAGCTGCCTGA 1356 44.84 MGISIFRAGFSVLVILGFVVCDLGVCNGGFTSGYVRNDYVASDMPLDSDVFKPPPGRNAAQQVHITQGDLEGKSVIISWVTPEKPGSNRVVYWAENSPIRNKAEGSVVSYKYFNYTSGFIHHCTIENLEYDTKYFYVIGFGRDLGQTYDSNKTLTHYESNPTKGQAMLFVGDLSYADRYPFHDNTRWDTWGRFVERSAAYQPWIWTAGNHELDYAPDIGETEPFKPFLHLYRVPYNALDGSSPLWYSIKRASAHIIVLSSYSSYVKSSPQYKWLQSELPRVNRDQTPWLIVLMHTPMYSSYVHHYMEGESMRVVFEPWFVNYKVDVVFAGHVHAYERSERVSNIAYNIVNGLCSPMRNQDAPVYITIGDGGNSEGLVTEMTEPQPRYSAYREASFGHATLDIKNRTHAYFAWHRNQDEYSVEADALWLHNRQWIASKLAKSAPVSHLSSAA 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2279538 2285691 + CmaCh12G004360.1 Cma12g00436 304926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00436 451 CDD MPP_PAPs 135 430 IPR041792 -
Cma12g00436 451 Gene3D - 132 439 IPR029052 -
Cma12g00436 451 PANTHER FE(3+)-ZN(2+) PURPLE ACID PHOSPHATASE 12 10 141 - -
Cma12g00436 451 PANTHER FE(3+)-ZN(2+) PURPLE ACID PHOSPHATASE 12 142 438 - -
Cma12g00436 451 SUPERFAMILY Purple acid phosphatase, N-terminal domain 43 143 IPR008963 GO:0003993|GO:0046872
Cma12g00436 451 PANTHER ACID PHOSPHATASE RELATED 10 141 IPR039331 GO:0003993
Cma12g00436 451 PANTHER ACID PHOSPHATASE RELATED 142 438 IPR039331 GO:0003993
Cma12g00436 451 Pfam Purple acid Phosphatase, N-terminal domain 61 142 IPR015914 GO:0003993|GO:0046872
Cma12g00436 451 SUPERFAMILY Metallo-dependent phosphatases 160 434 IPR029052 -
Cma12g00436 451 Pfam Iron/zinc purple acid phosphatase-like protein C 361 421 IPR025733 -
Cma12g00436 451 Pfam Calcineurin-like phosphoesterase 145 335 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00436 K22390 ACP7; acid phosphatase type 7 - csv:101210805 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00436 Cma-Chr12:2279538 Cma01g01134 Cma-Chr1:8310729 6.84E-76 dispersed
Cma11g01090 Cma-Chr11:6004373 Cma12g00436 Cma-Chr12:2279538 0 wgd
Cma12g00436 Cma-Chr12:2279538 Cma03g00710 Cma-Chr3:5767510 0 wgd
Cma12g00436 Cma-Chr12:2279538 Cma07g00454 Cma-Chr7:1976796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1025 . . . . . . . . . Cmo12g00387 . . . Car12g00413 . . Cpe07g00391 . . . . . . . . . . . . . . . . Cone17ag1369 . . . . Cme03g01915 . . . . . . . . . . . Cma12g00436 . . . . . . . . . . . . . . . . . . . . Csa02g02096 Chy03g01418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00436 Cma_Chr12 FPKM 16.025736 17.025738 62.834705 61.740242 29.193134 32.552536 30.74811 28.048347 26.653118 27.341152