Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00437 ATGTTGAATCCAGGAGCCAAGCAACCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCTCAAAAGGGCCTCCTCTTCTGCCCATCCCAGCTCAAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTACAAAGGTGTCCGTCAAAGAACTTGGGGCAAATGGGTTGCTGAGATTCGTGAGCCTAATCGTGGGGCTCGTCTTTGGCTTGGCACTTTTGATACCTCTCATGATGCTGCCATGGCTTATGACAATGCCGCTCGTCGCCTCTATGGCTCTGACGCCAAGCTCAATCTTCCTTCCTCTGCTGCAGAGCCTGAGAAGTCTGTGGTAAACAATGGCGGGATGGGGTTTGGGGAGGAGGACGAAAATGGTGGGCTTTGGAGGTCCATGAGTATTAGCTTAGATGATTCCATTTGGGTTGATGCAACCATGTCTTTGGATTTCCCTGTGATGGAAGATCAGAGCCTTTTGGCTGCGAATTTGGTGGATGGAAATGGCTGGGACACACTACAATGGTGCTTATGA 543 52.3 MLNPGAKQPPPPQQQQQQQLKRASSSAHPSSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSDAKLNLPSSAAEPEKSVVNNGGMGFGEEDENGGLWRSMSISLDDSIWVDATMSLDFPVMEDQSLLAANLVDGNGWDTLQWCL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2284706 2285248 - CmaCh12G004370.1 Cma12g00437 304927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00437 180 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Cma12g00437 180 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Cma12g00437 180 CDD AP2 47 107 IPR001471 GO:0003700|GO:0006355
Cma12g00437 180 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Cma12g00437 180 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Cma12g00437 180 MobiDBLite consensus disorder prediction 1 47 - -
Cma12g00437 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 115 163 - -
Cma12g00437 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 26 111 - -
Cma12g00437 180 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Cma12g00437 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 26 111 - -
Cma12g00437 180 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 115 163 - -
Cma12g00437 180 MobiDBLite consensus disorder prediction 12 31 - -
Cma12g00437 180 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Cma12g00437 180 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g01938 Cma12g00437 CCT
Cma05g00274 Cma12g00437 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00077 Cma-Chr6:423984 Cma12g00437 Cma-Chr12:2284706 1.68E-33 dispersed
Cma12g00437 Cma-Chr12:2284706 Cma14g00446 Cma-Chr14:2132048 3.98E-32 dispersed
Cma01g01938 Cma-Chr1:12583784 Cma12g00437 Cma-Chr12:2284706 1.88E-66 wgd
Cma12g00437 Cma-Chr12:2284706 Cma05g00274 Cma-Chr5:1160764 5.78E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35983 PF00847 AP2 1.80E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00437 - - cmos:111454192 344.739