Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00438 ATGGCCAACCTCAACTTCCATTTTGTGATTACCTTTCTCTTTCTTCTTCGCCATTTTTCTGCTACTTCGGATATTTCGGAGCTCTTCGAAATCTGGTGCACAGAACATGGAAAATCGTATTCCTCCGCGGAAGAAAAGCTATACAGACTCGGTGTTTTTGCCGATAACTATGAATTTGTTACTCATCACAATAATCAGGGAAATTCTTCTTATACTCTTTCTCTCAATGCTTATGCCGATATTACTCACCATGAGTTCAAGGCCGCTCGCTTGGGTCTTTCCTCTGCTTTGCGGAACTCACGGCCGGTTTCGCCGCAAGAACCCTATCTTCATCAGGATGTTCCTGAATTGTTAGATTGGAGGAAGAAAGGGGCTGTGACTGCTGTTAAGGATCAAGGAAGTTGTGGTGCTTGCTGGTCTTTCTCAGCAACAGGAGCTATTGAAGGGATTAACCAGATTAGAACAGGGTCTCTTATCAGTGTTTCTGAACAGGAATTAATTGATTGTGACAGATCGTATAATTCTGGCTGTGGAGGAGGACTGATGGATTATGCATACCAATTTGTGATAAAAAACCATGGGATCGACACCGAAGATGATTATCCTTTTCAAGGTCGTGATGGATCGTGTCGTAAGGACAAGGTCGTTACCATTGATGGCTATTCGGATGTTCCTCCAAACAATGAGGAAAAATTACTGCAAGCAGTAGCAATTCAACCTGTGAGTGTTGGTATCTGTGGCAGTGAGAGAGCTTTTCAATTATATTCAAAGGGAATTTTCTCTGGTCCATGTTCAACTTCCTTGGATCATGCTGTGTTGATTGTAGGATATGGATCAGAAAATGGTGTTGATTATTGGATCGTGAAGAACTCGTGGGGTAAACGTTGGGGAATGGATGGTTATATTCATATGCAGCGCAACAGCGGAAATTCTGAAGGCGTTTGCGGAATCAACATGCTTGCTTCATATCCAATTAAAACGAGTCCCAACCCGCCTCCCTCCCCTCCTCCAGGTCCAACAAAATGCAGTTTTCTTACTAGCTGTGCTGCTGGGGAGACCTGTTGTTGTGCAAAGGAATTTTTTGGCCTTTGCTTGTCTTGGAAATGCTGTGGTCTGAGCTCTGCTGTCTGTTGCAAGGACGGTCGTCATTGTTGCCCCTTTGATTATCCCATTTGTGATCCTCAGAGGAACCTATGCCTCAAGAGAACGATGAACGGTACAAGAACAGAAGCACTCGAGAATCGGAGTCCTTCGGGAACATCCGGACGGAGTTAG 1275 44.39 MANLNFHFVITFLFLLRHFSATSDISELFEIWCTEHGKSYSSAEEKLYRLGVFADNYEFVTHHNNQGNSSYTLSLNAYADITHHEFKAARLGLSSALRNSRPVSPQEPYLHQDVPELLDWRKKGAVTAVKDQGSCGACWSFSATGAIEGINQIRTGSLISVSEQELIDCDRSYNSGCGGGLMDYAYQFVIKNHGIDTEDDYPFQGRDGSCRKDKVVTIDGYSDVPPNNEEKLLQAVAIQPVSVGICGSERAFQLYSKGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKRWGMDGYIHMQRNSGNSEGVCGINMLASYPIKTSPNPPPSPPPGPTKCSFLTSCAAGETCCCAKEFFGLCLSWKCCGLSSAVCCKDGRHCCPFDYPICDPQRNLCLKRTMNGTRTEALENRSPSGTSGRS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2287015 2291955 + CmaCh12G004380.1 Cma12g00438 304928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00438 424 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 285 304 IPR025661 -
Cma12g00438 424 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 15 358 - -
Cma12g00438 424 SUPERFAMILY Cysteine proteinases 25 325 IPR038765 -
Cma12g00438 424 Gene3D Cysteine proteinases 13 327 - -
Cma12g00438 424 PANTHER OS05G0508300 PROTEIN 15 358 - -
Cma12g00438 424 Gene3D Granulin 340 410 IPR037277 -
Cma12g00438 424 SMART pept_c1 114 325 IPR000668 GO:0006508|GO:0008234
Cma12g00438 424 Pfam Cathepsin propeptide inhibitor domain (I29) 29 86 IPR013201 -
Cma12g00438 424 SMART Inhibitor_I29_2 29 86 IPR013201 -
Cma12g00438 424 CDD Peptidase_C1A 115 324 IPR039417 -
Cma12g00438 424 SUPERFAMILY Granulin repeat 339 372 - -
Cma12g00438 424 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 132 143 IPR000169 -
Cma12g00438 424 PRINTS Papain cysteine protease (C1) family signature 132 147 IPR000668 GO:0006508|GO:0008234
Cma12g00438 424 PRINTS Papain cysteine protease (C1) family signature 270 280 IPR000668 GO:0006508|GO:0008234
Cma12g00438 424 PRINTS Papain cysteine protease (C1) family signature 285 291 IPR000668 GO:0006508|GO:0008234
Cma12g00438 424 Pfam Papain family cysteine protease 114 325 IPR000668 GO:0006508|GO:0008234
Cma12g00438 424 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 268 278 IPR025660 -
Cma12g00438 424 Pfam Granulin 353 400 IPR000118 -
Cma12g00438 424 SMART GRAN_2 342 399 IPR000118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00438 - - - csv:101211052 768.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01819 Cma-Chr1:12067366 Cma12g00438 Cma-Chr12:2287015 1.19E-134 dispersed
Cma09g00255 Cma-Chr9:1072704 Cma12g00438 Cma-Chr12:2287015 1.79E-132 dispersed
Cma11g01323 Cma-Chr11:8782232 Cma12g00438 Cma-Chr12:2287015 6.42E-121 dispersed
Cma12g00438 Cma-Chr12:2287015 Cma20g00586 Cma-Chr20:2780924 2.50E-90 dispersed
Cma12g00438 Cma-Chr12:2287015 Cma11g01732 Cma-Chr11:11510182 3.25E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00438 Cma_Chr12 FPKM 13.535948 14.988907 43.740795 43.278664 30.176758 26.042046 32.121193 42.535595 41.702461 46.305439