Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00439 ATGGCTGTTGAAGGTCAAGTGATTCCACTTCGCGATGCTGAAGAATTCGATGCGATAATCGATAAAGAGAAGGAATCTGGCAGACTGATTGTGATCGATTTTACTGCTTCCTGGTGCCCGCCATGCCGTTTCATTGCTCCAGTATTCGCAGAGTTGGCTAAGGCGCACGTCCATGTCACTTTCTTGAAAGTGGACGTCGATAATGTCAAGGAAATTGCTAAGAGGTTCGAGGTGACAGCGATGCCGACCTTTGTTTTCCTGAAAGGAGGAAACGAAGTTCACAGGATTGTTGGTGCGGACAAGGTGGAGCTAGGGGTTAAAGTACTGGAAAACCGATTTCTGTTTGTCCCAATGGCTGAAGAAGGGCAAGTGATCGCATGCCATAAGAAAGCTGAATGGGATGCTCATTTAGCGAAAGCGAAGGAATCCGGAAAACTGATTGTTGTGGATTTTACTGCTTCCTGGTGCGGGCCATGCCGTACAATTGCTCCATATTTCTCAGAATTGGCTAAGAATCATCCCGGTGTCGTTTTCCTGAAAGTGGACGTCGATGAATTGAACACTGTTGCTACCGAGTGGGAGATCAATGCAATGCCGACATTTGTTTTCATGAAACGAGGGGAAACAGTTCACAAGATTGTTGGTGCTGATAAATCGGCGCTGTTGAAAAAAATAGAAGAGCTCAAGACTCCAACTGCTGCTACTACTTCTACTGCTTAG 720 46.11 MAVEGQVIPLRDAEEFDAIIDKEKESGRLIVIDFTASWCPPCRFIAPVFAELAKAHVHVTFLKVDVDNVKEIAKRFEVTAMPTFVFLKGGNEVHRIVGADKVELGVKVLENRFLFVPMAEEGQVIACHKKAEWDAHLAKAKESGKLIVVDFTASWCGPCRTIAPYFSELAKNHPGVVFLKVDVDELNTVATEWEINAMPTFVFMKRGETVHKIVGADKSALLKKIEELKTPTAATTSTA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2293396 2296987 + CmaCh12G004390.1 Cma12g00439 304929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00439 239 ProSiteProfiles Thioredoxin domain profile. 1 97 IPR013766 -
Cma12g00439 239 PANTHER THIOREDOXIN 1 110 - -
Cma12g00439 239 ProSiteProfiles Thioredoxin domain profile. 102 230 IPR013766 -
Cma12g00439 239 CDD TRX_family 135 226 - -
Cma12g00439 239 PANTHER THIOREDOXIN 118 231 - -
Cma12g00439 239 PRINTS Thioredoxin family signature 147 155 - -
Cma12g00439 239 PRINTS Thioredoxin family signature 194 205 - -
Cma12g00439 239 PRINTS Thioredoxin family signature 155 164 - -
Cma12g00439 239 Pfam Thioredoxin 126 226 IPR013766 -
Cma12g00439 239 Pfam Thioredoxin 13 101 IPR013766 -
Cma12g00439 239 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cma12g00439 239 ProSitePatterns Thioredoxin family active site. 148 166 IPR017937 -
Cma12g00439 239 SUPERFAMILY Thioredoxin-like 4 111 IPR036249 -
Cma12g00439 239 Gene3D Glutaredoxin 1 111 - -
Cma12g00439 239 Gene3D Glutaredoxin 116 234 - -
Cma12g00439 239 PANTHER THIOREDOXIN 1 110 - -
Cma12g00439 239 PANTHER THIOREDOXIN 118 231 - -
Cma12g00439 239 SUPERFAMILY Thioredoxin-like 121 229 IPR036249 -
Cma12g00439 239 CDD TRX_family 14 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00439 K03671 trxA; thioredoxin 1 - hbr:110664111 215.312
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00273 Cma-Chr5:1157654 Cma12g00439 Cma-Chr12:2293396 1.77E-43 dispersed
Cma09g00923 Cma-Chr9:4609063 Cma12g00439 Cma-Chr12:2293396 6.06E-25 dispersed
Cma12g00439 Cma-Chr12:2293396 Cma18g01188 Cma-Chr18:9449922 1.59E-23 dispersed
Cma15g00179 Cma-Chr15:819699 Cma12g00439 Cma-Chr12:2293396 4.32E-24 dispersed
Cma18g00326 Cma-Chr18:1747321 Cma12g00439 Cma-Chr12:2293396 3.04E-22 dispersed
Cma03g01485 Cma-Chr3:9246482 Cma12g00439 Cma-Chr12:2293396 4.08E-15 transposed
Cma01g01935 Cma-Chr1:12574707 Cma12g00439 Cma-Chr12:2293396 1.89E-29 wgd
Cma12g00439 Cma-Chr12:2293396 Cma03g00711 Cma-Chr3:5772341 4.86E-30 wgd
Cma12g00439 Cma-Chr12:2293396 Cma05g00272 Cma-Chr5:1155062 5.25E-31 wgd
Cma12g00439 Cma-Chr12:2293396 Cma07g00455 Cma-Chr7:1987884 3.38E-28 wgd
Cma12g00439 Cma-Chr12:2293396 Cma09g00130 Cma-Chr9:561624 1.01E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1015 . . . . . . . . Cmo05g00277 Cmo12g00390 . . . Car12g00416 . . Cpe07g00394 Bhi04g00209 . . . Hepe10g0604 . . Cla08g01456 Cam08g1941 Cec08g1515 Cco08g1654 Clacu08g1631 . Cre08g1417 . . . . . . Chy04g00470 Cme03g01919 . . . . . . . . . . . Cma12g00439 . Car05g00225 . Cpe11g00225 . . . . . . . . . . . . . . . Lsi08g01362 Csa02g02092 Chy03g01423 Cme04g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002761 0 2 0 0 0 2 4 2 2 2 2 2 3 2 2 3 2 0 3 2 3 1 3 2 2 3 2 2 3 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00439 Cma_Chr12 FPKM 179.390915 186.689423 245.609451 241.170044 104.851463 125.287514 96.862846 109.647285 113.500107 111.114922