Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00440 ATGCCAGCAGGCTTCCAAGAACAGGGTGGCTGTGTGGCCGCGATAGAGCTCATCAGCGCATATGGAAAGGGCAATGGGCTCCTCCGACCAGCCATAATAGCCATTGATGCAATGTCTAAAATTGGGTCTAAGATCAAGCCAGTCTCGGCTGGACCCTTTGGAGGACCAGGTGGGAACAAGTGGGATGATGGGGTTTTTTCGAGTATCAGGCAGTTGGTAATTTCTCATGGAGCTGGTATCGACTCCATTAAGATTCAATATGATGTGAAGGGAACGCCAATTTGGTGTGATAGACATGGAGGAAATGGTGGCACTAAAACAGACACGGTGAAACTTGACTTCCCGGACGAGTACTTGACGATGATCCGAGGACACTACGGTAGCTTTGTGTCATATGACCAAATTTTCGTTCGATCCCTGACATTTATGAGCAACAAAAGGAAGTATGGACCTTACGGGGTCGAACTCGGAAGAGTTTTCTCATTCCCAACGACCGAGGGCAAGCTTGTCGGGTTCCATGGCAGGAGTGGATTGTACTTGGATGCCATTGGAGTTTACCTAAAGCCTATGTCAATACAAACGCCATCTAAAGCAATTGTTCAATCACAGAGTTATGTTGCTACTAAGACAGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGCCAAAATTATGATATTGTTCTTGCTGTAAAGCAGAAGGATGAACTCAAAAAGCCCCTTCCATCAAGCTCCTCAAGCTCAGAATCAAGTGATGATGAATCCATAACGAAGAGGCCTGTTAAGAAAGGACCTTCTAAAGCTGAAAATGTTGTGCCATGTGGACCCTGGGGTGGCTCAGGAGGAACTGCATTTGATGATGGATGTTACACTGGCGTTATCTTCGACTATCCATACGAAATCTTGACTCATGTAACTGGACACTATGGTCCTGTAATGTACATGGGACCTAACGTTATCAAGTCGCTTACATTCCATACTACAAAAGCCAAGTACGGACCATTTGGGGAGGCACAAGGAACCCCTTTCAGTACCAACGTCAAAGAGGGGAAGATTATTGGATTTCATGGCAGGAAAGGTCTGTTCCTCGATGCGCTCGGTGTGCACATAGTAGAAGGAAAGGTGACCCCGGCGTCTCGTCCTCCCTCTGGTGATATCGTTCCTGCTACACAACCACTTCTCGAAAACGAGAGCGCTCATTGGACTAAGAAACTTGCTCCTTCAAATGGAAGACCACTTGAAGAGATGGCTCGTGTAGTAAAAGAACCAGCTCCCTGTGGACCGGGACCGTGGGGTGGGGATGGAGGAAAACCGTGGGACGATGGAGTGTTTTCTGGCATTAAACAAATATACCTGACCAAATCTCTTGAAGCTTTTTGTTCAATCCAAATTGAATATGATCGAAACAAGCAATCAGTTTGGTCAGTTAAGCATGGAGGAAACGGTGGAATGACCATGCATCGGGTAAAGCTGGATTATCCACACGAAGTGTTGACTTGTATCTCGGGATATTACGGTTACATCGGTAAAGATGAACGACAACAAGTTATAAAGTCGCTTTCTTTACACACAAGTAGGGGGAAGTTCGGACCGTTCGGGGAGGAGATAGGAACCTTTTTCACGTCGACGATAACCGAGGGGAAGGTGGTTGGCTTCCATGGGAGGAGCAGCTTGTACTTGGACGCCATTGGAGTTCACATGCAGCACTGGCTAGGTAGCCAAAGATCATCCAAGTCGTCCATGTTTAGACTGTTCTGA 1761 46.56 MPAGFQEQGGCVAAIELISAYGKGNGLLRPAIIAIDAMSKIGSKIKPVSAGPFGGPGGNKWDDGVFSSIRQLVISHGAGIDSIKIQYDVKGTPIWCDRHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSYDQIFVRSLTFMSNKRKYGPYGVELGRVFSFPTTEGKLVGFHGRSGLYLDAIGVYLKPMSIQTPSKAIVQSQSYVATKTESEGYSIIQGSVGQNYDIVLAVKQKDELKKPLPSSSSSSESSDDESITKRPVKKGPSKAENVVPCGPWGGSGGTAFDDGCYTGVIFDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEAQGTPFSTNVKEGKIIGFHGRKGLFLDALGVHIVEGKVTPASRPPSGDIVPATQPLLENESAHWTKKLAPSNGRPLEEMARVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTKSLEAFCSIQIEYDRNKQSVWSVKHGGNGGMTMHRVKLDYPHEVLTCISGYYGYIGKDERQQVIKSLSLHTSRGKFGPFGEEIGTFFTSTITEGKVVGFHGRSSLYLDAIGVHMQHWLGSQRSSKSSMFRLF 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2297184 2303994 + CmaCh12G004400.1 Cma12g00440 304930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00440 586 PANTHER JACALIN-RELATED LECTIN 3 517 570 - -
Cma12g00440 586 CDD Jacalin 58 188 IPR033734 GO:0030246
Cma12g00440 586 PANTHER JACALIN-RELATED LECTIN 3 295 511 - -
Cma12g00440 586 MobiDBLite consensus disorder prediction 239 273 - -
Cma12g00440 586 CDD Jacalin 440 569 IPR033734 GO:0030246
Cma12g00440 586 ProSiteProfiles Jacalin-type lectin domain profile. 426 570 IPR001229 -
Cma12g00440 586 SUPERFAMILY Mannose-binding lectins 426 568 IPR036404 -
Cma12g00440 586 Pfam Jacalin-like lectin domain 296 371 IPR001229 -
Cma12g00440 586 Pfam Jacalin-like lectin domain 437 569 IPR001229 -
Cma12g00440 586 Pfam Jacalin-like lectin domain 58 189 IPR001229 -
Cma12g00440 586 PANTHER BNAA06G13880D PROTEIN 32 74 - -
Cma12g00440 586 SMART Jacalin_2 58 189 IPR001229 -
Cma12g00440 586 SMART Jacalin_2 245 373 IPR001229 -
Cma12g00440 586 SMART Jacalin_2 437 570 IPR001229 -
Cma12g00440 586 SUPERFAMILY Mannose-binding lectins 273 371 IPR036404 -
Cma12g00440 586 PANTHER JACALIN-RELATED LECTIN 3 66 294 - -
Cma12g00440 586 PANTHER JACALIN-RELATED LECTIN 3 32 74 - -
Cma12g00440 586 ProSiteProfiles Jacalin-type lectin domain profile. 47 189 IPR001229 -
Cma12g00440 586 PANTHER BNAA06G13880D PROTEIN 295 511 - -
Cma12g00440 586 CDD Jacalin 276 371 IPR033734 GO:0030246
Cma12g00440 586 Gene3D - 292 372 IPR036404 -
Cma12g00440 586 Gene3D - 35 187 IPR036404 -
Cma12g00440 586 Gene3D - 418 569 IPR036404 -
Cma12g00440 586 PANTHER BNAA06G13880D PROTEIN 66 294 - -
Cma12g00440 586 PANTHER BNAA06G13880D PROTEIN 517 570 - -
Cma12g00440 586 ProSiteProfiles Jacalin-type lectin domain profile. 207 373 IPR001229 -
Cma12g00440 586 SUPERFAMILY Mannose-binding lectins 47 189 IPR036404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00440 - - - cpep:111798429 1032.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00270 Cma12g00440 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00151 Cma-Chr9:643451 Cma12g00440 Cma-Chr12:2297184 2.10E-27 dispersed
Cma09g00152 Cma-Chr9:648274 Cma12g00440 Cma-Chr12:2297184 6.31E-28 dispersed
Cma12g00440 Cma-Chr12:2297184 Cma05g00270 Cma-Chr5:1147661 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00440 Cma_Chr12 FPKM 6.625179 6.394238 11.41998 11.509353 4.801569 5.148802 5.58794 2.854475 2.616065 2.737497