Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00443 ATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCCACCTCATTCAATCAACACCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCCTTTTGTTCCGCTTCTCAATTCTCCTCCGAAGTTGCTGAACCAACTCATATGGATGATTCCTCGAAGCGTGGTTCCCTGAAACCTGGGTTATATATAGTTAGCACACCAATTGGTAATCTTGAAGATATCACCTTACGTGCCCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTGTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGACGCGGGGACGCCAGGCATTAGTGATCCTGGTACTGAGTTGGTAAGATTATGCGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCGGCTGTCATTGCTGCTCTTTCTGCCTCTGGCCTGTCGACCAATGAGTTTACATTTGGTAAAATTTGTACCGTTGGATTTGTTCCTAAGCATGCTGCATCTAGAAGAAAGAGGCTGATGGTTTCAGCAAATGAGGAGGCGACACAAATATTCTATGTTCCTCCGCACAAAGTTAAGCAGTTTCTCGAGGAAACTTCATCATTATTTGGTGAATCAAGGAAATGTGTTATAGCTCGGGAAATGACCAAGATACACGAGGAGTTTTGGCGGGGTACCCTGGCTGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATTGAAGGAAAGCTAAATTCCGAAGTCGAAACTCCATCGGAATCACAGCTGGAAAACGAGTTGGAAGAATTGATCTCCAGTGGGCATAGGCTTTCTATGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCCAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAACGGAGAACGATTCCTGCAAATAA 1107 44.26 MLTRRIPSVAVYLPQALPWRRGPPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEVAEPTHMDDSSKRGSLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRLCVNASIPVVPIPGPSAVIAALSASGLSTNEFTFGKICTVGFVPKHAASRRKRLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRKCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLENELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGTENDSCK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2315444 2319612 - CmaCh12G004430.1 Cma12g00443 304933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00443 368 CDD RsmI 80 301 IPR008189 GO:0008168
Cma12g00443 368 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 63 364 - -
Cma12g00443 368 SUPERFAMILY Tetrapyrrole methylase 77 300 IPR035996 GO:0008168
Cma12g00443 368 Gene3D - 64 185 IPR014777 GO:0008168
Cma12g00443 368 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 79 353 IPR008189 GO:0008168
Cma12g00443 368 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 63 364 IPR008189 GO:0008168
Cma12g00443 368 Hamap Ribosomal RNA small subunit methyltransferase I [rsmI]. 78 302 IPR008189 GO:0008168
Cma12g00443 368 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 79 283 IPR000878 GO:0008168
Cma12g00443 368 Gene3D - 186 306 IPR014776 GO:0008168
Cma12g00443 368 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 156 167 IPR018063 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00443 K07056 rsmI; 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] - csv:101212996 620.157
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1008 . . . . . . . . . Cmo12g00393 . . . Car12g00419 . . Cpe07g00397 Bhi04g00206 . . . . . . Cla08g01459 Cam08g1945 Cec08g1519 Cco08g1658 Clacu08g1635 . Cre08g1421 . . . Cone20ag0117 . . . Cme03g01923 . . . . . Bpe05g00109 . . . . . Cma12g00443 . . . . . . . . . . . . . . . . . . . Lsi08g01365 Csa02g02087 Chy03g01427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011286 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 2 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00443 Cma_Chr12 FPKM 2.253932 2.818171 3.795979 3.551615 11.038716 11.149119 10.210098 5.169803 5.466038 5.570093