Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00445 ATGGCTACGCCAGTTGAGCCTCCAAATGGGGTTAGATCCCAAGGGAAGCATTACTATTCAATGTGGCAAACATTATTTGAGATTGATACTAAATATGTACCCATTAAGCCTATTGGTCGAGGGGCATATGGTATTGTGTGTTCTTCTGTGAATAGGGAAACGAACGAGAAAGTTGCGATAAAGAGGATACATAATGCGTTTGAGAATCGTATCGATGCGCTTCGAACTTTGCGTGAATTGAAGCTTCTTAGGCATCTTCGTCACGAAAACGTGATATGTTTGAAAGATGTTATGATGCCTATTCATAGGAGAAGTTTTAAAGATGTTTATTTGGTTTATGAACTTATGGATACGGATCTTCATCAGATTATTAAGTCCTCGCAGACTCTTACCAATGATCACTGCCAATATTTTCTCTTTCAGTTGCTCAGAGGATTAAAGTATCTGCACTCTGCAAACATCCTACATCGAGACTTGAAGCCTGGGAACCTCCTTGTCAATGCAAATTGTGACCTCAAGATATGTGATTTCGGGTTAGCCCGTACGAGCAACGGCAAGAATCAATTCATGACAGAGTATGTCGTTACTCGCTGGTACCGAGCCCCAGAATTGCTCCTCTGCTGTGAGAATTACGGGACATCGATCGATGTGTGGTCTGTTGGATGTATCTTTGCCGAGCTTCTTGGTAGGAAACCTATCTTCCCAGGTACTGAATGTTTGAATCAACTCAAACTGATAATTAACATACTGGGTAGCCAAAGAGAGGAAGATCTCGAGTTTATAGACAATCCAAAGGCAAGGAGGTACATAAAATCCCTTCAGTACTCTCCCGGGGCTCCGCTTTCCCGTCTTTATCCAAATGCTCATCCTCTTGCAATCGATCTGCTACAAAAGATGCTTGTCTTTGACCCATCAAAGAGGATCAGTGTAACTGAAGCATTGCAACATCCTTTCATGTCTCCACTGTATGATCCAAACAACAACCCTCCAGCTCAGGTACCGATCGACCTCGACATAGATGAGGAACTTGGAGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAGGTCTGGAAGAGCACGCAGAAATGAAATGTTTCCACCCCGAACCTACTACGAGTGGTACCGTGGTGTTTTCTTGA 1161 42.98 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQTLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARRYIKSLQYSPGAPLSRLYPNAHPLAIDLLQKMLVFDPSKRISVTEALQHPFMSPLYDPNNNPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEGLEEHAEMKCFHPEPTTSGTVVFS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2332098 2336718 - CmaCh12G004450.1 Cma12g00445 304935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00445 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cma12g00445 386 CDD STKc_TEY_MAPK 26 361 - -
Cma12g00445 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cma12g00445 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00445 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cma12g00445 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00445 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cma12g00445 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cma12g00445 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Cma12g00445 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma12g00445 386 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g00445 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00263 Cma12g00445 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00445 Cma-Chr12:2332098 Cma16g00631 Cma-Chr16:3258541 0 dispersed
Cma04g00758 Cma-Chr4:3866271 Cma12g00445 Cma-Chr12:2332098 3.19E-154 transposed
Cma12g00445 Cma-Chr12:2332098 Cma05g00263 Cma-Chr5:1112475 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68948 PF00069 Pkinase 1.60E-71 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00445 K20535 - csv:101213478 753.051