Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00447 ATGAGGGGAGAGAGTGAGAGCATGGCAAGGCAGCTGCCCCATAATCATATGGAGAATGACATTCCAGGAACTGCATCTACTCTTTATGTGCAGGAAGAGCATTTGAACTCTGCACGTAAATGGTATTTCTGTAAACAGGAAATTGAACATAATTCTCCATCCAGGAAGGATGGAATTGATTTCAAGAAAGAGGCTCAACTGAGGAAGTCGTATTGCTCGTTTCTTCAAGAGCTTGGCATGAAGCTGAAAGTGCCTCAAGTAACAATTGCAAGTGCCATGATGGTTTGCCACCGATTCTATATGCGTCAGTCCCATGCTAAAAATGACTGGCAGACAATCGGAACAACAGGCATGTTTCTTGCCTGTAAGATTGAAGAGACACCAAGGTTTCTGAATGATGTTGTTGTTGTGGCTTATGAGTTGATATACCAATGGGATCCTTCTGCCCCTAAAAGAATTAGACAAAAAGAAGTTTTCAACAAACAAAAGGAACTAATCTTGATTGGGGAGAGGCTTCTATTGTCAACGCTTGCATTTGATGTCGACGTTCAACTTCCCTACAAGCCACTTGTTGCTGCTCTAAAAAGATTAGGAATGGCTGCTGATCTTGGGAAGGTGGCCTGGAATTTTGTAAATGATTGGCTTTATACAACATTGTGCTTGGAGTACAAACCCCATTATATTGCTGCTGGTTCGATATTCCTCGCTTCCAAATTTCAAAAAGTGAAATTGCCTTCGGATAGGGGAAAGGTTTGGTGGATGGAGTTCGATGTTTCACCGAAACAGTTACAAGAGGTTATACAGAAAATGTTGAAGTTATTTGAGAAAGATAGAAAACAAAACCCACCACCTTCAAAGACTCATCAGCCTGAACCTTTAGATGGACAGACAAGGGTTGATAGCTCCCAATCATGTATATCCAGCGTGACAATTTCCGATCAGCTTGATAGTCATGATGCCACGACGGAGGCCAGTGACTGCAATGAGCCTGTACTGCCTAATTGTTGCCACAATCAGGAAACTATGAATTACTGCATCAGTCCTGTGGAAGTTTTACCCTGCCAAACAAGCGATACTGGGAGTTCAAGTAGCGCTATCGACAATGGTGATACTGGGATTTGTCGGAGTACCGAGGAAATTTATACTGATCAGACCACGCAGTCAACAACTGGTTCTGTATCTGTTTCTAAGGACTTCAGTAAGATAAACGTATTCCAACTCAGGGAGGCAATAAAGAGAAGACGACTTTGTAGAGTTACAAGTACAAAGGAAGTACAGCCCATGAGCCCCGATATTGACAGCGAAGCATGGATCGAAAAGGAGCTGGAACATGGAATAGAGTTAGAATATGAATCGTCATTGAAAAAGAGAATAAAGGCATCTTGA 1386 42.28 MRGESESMARQLPHNHMENDIPGTASTLYVQEEHLNSARKWYFCKQEIEHNSPSRKDGIDFKKEAQLRKSYCSFLQELGMKLKVPQVTIASAMMVCHRFYMRQSHAKNDWQTIGTTGMFLACKIEETPRFLNDVVVVAYELIYQWDPSAPKRIRQKEVFNKQKELILIGERLLLSTLAFDVDVQLPYKPLVAALKRLGMAADLGKVAWNFVNDWLYTTLCLEYKPHYIAAGSIFLASKFQKVKLPSDRGKVWWMEFDVSPKQLQEVIQKMLKLFEKDRKQNPPPSKTHQPEPLDGQTRVDSSQSCISSVTISDQLDSHDATTEASDCNEPVLPNCCHNQETMNYCISPVEVLPCQTSDTGSSSSAIDNGDTGICRSTEEIYTDQTTQSTTGSVSVSKDFSKINVFQLREAIKRRRLCRVTSTKEVQPMSPDIDSEAWIEKELEHGIELEYESSLKKRIKAS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2353985 2361559 + CmaCh12G004470.1 Cma12g00447 304937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00447 461 PANTHER CYCLIN 320 451 IPR043198 GO:0006357|GO:0016538
Cma12g00447 461 PANTHER CYCLIN 31 325 IPR043198 GO:0006357|GO:0016538
Cma12g00447 461 SUPERFAMILY Cyclin-like 185 286 IPR036915 -
Cma12g00447 461 Pfam Cyclin, N-terminal domain 42 181 IPR006671 -
Cma12g00447 461 SUPERFAMILY Cyclin-like 38 183 IPR036915 -
Cma12g00447 461 SMART cyclin_7 73 175 IPR013763 -
Cma12g00447 461 SMART cyclin_7 188 272 IPR013763 -
Cma12g00447 461 MobiDBLite consensus disorder prediction 278 302 - -
Cma12g00447 461 Gene3D - 183 287 - -
Cma12g00447 461 MobiDBLite consensus disorder prediction 1 22 - -
Cma12g00447 461 CDD CYCLIN 183 239 IPR013763 -
Cma12g00447 461 Gene3D - 29 181 - -
Cma12g00447 461 PANTHER CYCLIN-T1-3 31 325 - -
Cma12g00447 461 PANTHER CYCLIN-T1-3 320 451 - -
Cma12g00447 461 CDD CYCLIN 67 138 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00447 K15188 CCNT; cyclin T - csv:101214841 761.911
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00261 Cma12g00447 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00447 Cma-Chr12:2353985 Cma13g00448 Cma-Chr13:4997132 3.30E-118 dispersed
Cma12g00447 Cma-Chr12:2353985 Cma05g00261 Cma-Chr5:1102526 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g991 . . . . . . . . Cmo05g00266 Cmo12g00397 . . . Car12g00422 . . Cpe07g00401 Bhi04g00195 . . . Hepe10g0615 . . Cla08g01465 Cam08g1953 Cec08g1528 Cco08g1666 Clacu08g1643 . Cre08g1428 . . Cone17ag1357 . . . . Cme03g01931 . . . . . . . . . . . Cma12g00447 Cma05g00261 Car05g00219 . Cpe11g00216 . . . . . . . . . . . . . . . Lsi08g01374 Csa02g02077 Chy03g01436 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008671 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00447 Cma_Chr12 FPKM 7.423807 6.842598 9.312567 8.969375 9.446821 8.717834 9.209813 11.146642 11.97146 10.61214