Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00452 ATGCCCTTTTCGCTCTGCTTTTGGTGCTTTCCTGCCGCCGCTTTCGGCGGAGCCGCCCTCTCGATCCTCATCGTTTTCCTATTTTCTATGAAGAGTAGCGTGCGGCGGCCGAGTTCTGATTCTTCTCCTCCTCCCCCTGGAAGCAGAGGATTGCCTTTGATCGGAGAGACGATTCAGTTTATGGCCGCCGTCAATAGCAGCAACGGCGTTTATGATTTCGTCAGAATCCGCTGCCTCCGATATGGAGGATGTTTCAAGACTCGAATATTTGGCGAGACGCATGTGTTTGTATCGAGCACCGAATCGGCGAAGCAGATACTCAACGACGGCGGAGTCAACTACACCAAGAAGTACATAAGGTCCATTGCAGAGCTAGTCGGGCATCGGAGTTTGCTCTGCGCCTCGCATCTTGACCACAAGTTCTTACGCAGCCATCTCATCAATCTATTCTCTACCAGTTTTTTGGCTTCCTTTGTCACGCAGTTCGATCAGCAGATCGTTGAGGCGCTTCGAGGCTGGGAAAGCGGATCCACCATTGTCCTCCTCAACCAAGCCCTCAAGATAACATGCAAAGCAATGTGCAAAATGCTAATGAGCATACAAAACGACGACGAATTAGAGCTACTCCAGAAGGAGGTAGCTCATGTATGTGAAGCTATGCTTGCATTCCCATGGCGGTTTCCTGGGACAAGATTCCACAACGGCCTCAAGGCAAGAAGAAGAATCATTAAAATACTCGAAAAGATGATATGGGAGCGACAAAGATCAGAAGCTTGGCACGACGATTTCTTGCAACGATTGTTGTCAGAGGAGGGCGACGATGGTAGAGGAGCGTTGTCGGATGTGGAGATCGGAGATAACATATTGACGATGTTGATCGCAGGACAAGATACGACGGCAAGTGCCATCACGTGGATGGTGAAGTTCTTGGACGAGAACCCAGATGTTCTTCAAAATTTGAAGGATGAACAATTTGAGATATTGATGAACAAACATCGAGATCGTGATCGTGAGAATTGTTTCCTTACGTTGGAAGATCTTGGCAACATGTGTTATGCTCCTAAGGTAGTAAAAGAATCCTTGAGGTTAGCATCGGTGGTGCCATGGTTTCCAAGGCTAGTCCTCCAAGACTCTCAAATTCAAGGTTACAAAGTCAACAAAGGTTGGAATGTCAACATTGATGTAAGGTCACTACACTCACATCCTTCTATCTTCCATCACCCTACCATCTTCGATCCTTCCAGATTTTATGAAGAAGCAAAGCCCTATAGTTTTCTAGCGTTTGGAATGGGAGGGAGGCAATGTCTAGGGATGAACCTGGCCAAAGCCATGATGCTCGTCTTTCTTCACCGCTTGGTGACTTCTTACAGATGGAAGGTGATCGACTCCGACCCGAGTATTGAGAAGTGGGCACTTTTTTCTAAACTTAAGAGCGGTTGTCCGATTATTGTCACACGTATTGAATCCTAA 1470 47.21 MPFSLCFWCFPAAAFGGAALSILIVFLFSMKSSVRRPSSDSSPPPPGSRGLPLIGETIQFMAAVNSSNGVYDFVRIRCLRYGGCFKTRIFGETHVFVSSTESAKQILNDGGVNYTKKYIRSIAELVGHRSLLCASHLDHKFLRSHLINLFSTSFLASFVTQFDQQIVEALRGWESGSTIVLLNQALKITCKAMCKMLMSIQNDDELELLQKEVAHVCEAMLAFPWRFPGTRFHNGLKARRRIIKILEKMIWERQRSEAWHDDFLQRLLSEEGDDGRGALSDVEIGDNILTMLIAGQDTTASAITWMVKFLDENPDVLQNLKDEQFEILMNKHRDRDRENCFLTLEDLGNMCYAPKVVKESLRLASVVPWFPRLVLQDSQIQGYKVNKGWNVNIDVRSLHSHPSIFHHPTIFDPSRFYEEAKPYSFLAFGMGGRQCLGMNLAKAMMLVFLHRLVTSYRWKVIDSDPSIEKWALFSKLKSGCPIIVTRIES 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2380444 2383940 + CmaCh12G004520.1 Cma12g00452 304942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00452 489 Gene3D Cytochrome P450 34 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PANTHER CYTOCHROME P450, FAMILY 722, SUBFAMILY A, POLYPEPTIDE 1 21 485 - -
Cma12g00452 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Cma12g00452 489 Pfam Cytochrome P450 45 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 SUPERFAMILY Cytochrome P450 43 486 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PANTHER CYTOCHROME P450 26 21 485 - -
Cma12g00452 489 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma12g00452 489 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00452 Cma-Chr12:2380444 Cma16g00505 Cma-Chr16:2597830 1.24E-69 dispersed
Cma12g00452 Cma-Chr12:2380444 Cma03g00726 Cma-Chr3:5830083 1.31E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00452 - - cmos:111454446 918.302