Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00458 ATGGGAACTCTGGGGAAAGCCATTTACACCGTTGGATTTTGGATCCGTGAGACGGGTCAGGCAATCGATCGCCTTGGCTGCCGCCTCCAAGGGAGGTATTTCTTTCAAGAACAGCTGTCTAGGCATCGAACTTTGATGAACGTATTTGATAAGGCTCCTTTTGTTGACAAGGACGCATTTGTGGCTCCAAGTGCATCCATTATTGGGGATGTCCAAGTTGGAAGTGGATCATCTATTTGGTATGGATGCGTATTGAGAGGTGACGCGAACAGCATCAGTGTGGGATCTGGAACCAACATACAGGACAATTCCCTTGTGCACGTGGCAAAATCTAATCTAAGTGGAAAGGTTTTGCCGACTATCATTGGCGACAATGTCACCATAGGTCACAGTGCTGTATTACATGGCTGCACCGTTGAGGACGAGGCTTTTATTGGGACGGGGGCAATGTTGCTTGATGGCTCCATTGTTGAGAAGAATGCTATGGTAGCTGCTGGAGCTCTTGTGAGGCAGAATACTAAGATCCCCTCCGGAGAGGTATGGGGAGGCAATCCAGCAAAATTCCTCAGAAAGCTCACTGATGAAGAGAGAGCTTTCATATCTCAGTCTGCCACCAATTACTCGGACCTTGCACAGGTTCACGCAGCCGAAAATGCCAAGCTTTTTGATAGAATCGAGTTTGAGAAGGCGCTTCGCAAGAAGTTCACTCGCAAGGACGAGGAATATAACTCAACGCTCGGTGTTGTTTGTGAAACACCCCCTGAGCTCGTCCACCCCGATAAAGATCCCAAGCCTTTGCAGAAATAA 807 48.2 MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGRYFFQEQLSRHRTLMNVFDKAPFVDKDAFVAPSASIIGDVQVGSGSSIWYGCVLRGDANSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDEAFIGTGAMLLDGSIVEKNAMVAAGALVRQNTKIPSGEVWGGNPAKFLRKLTDEERAFISQSATNYSDLAQVHAAENAKLFDRIEFEKALRKKFTRKDEEYNSTLGVVCETPPELVHPDKDPKPLQK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2402740 2406621 - CmaCh12G004580.1 Cma12g00458 304948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00458 268 CDD LbH_gamma_CA_like 54 212 - -
Cma12g00458 268 Gene3D Hexapeptide repeat proteins 43 222 - -
Cma12g00458 268 Pfam Hexapeptide repeat of succinyl-transferase 119 150 IPR001451 -
Cma12g00458 268 PANTHER DYNACTIN SUBUNIT P25 1 261 - -
Cma12g00458 268 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 1 261 - -
Cma12g00458 268 SUPERFAMILY Trimeric LpxA-like enzymes 47 212 IPR011004 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00458 K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] - csv:101214840 485.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00256 Cma12g00458 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00053 Cma-Chr10:193352 Cma12g00458 Cma-Chr12:2402740 3.86E-42 dispersed
Cma11g00027 Cma-Chr11:121811 Cma12g00458 Cma-Chr12:2402740 3.76E-38 dispersed
Cma12g00458 Cma-Chr12:2402740 Cma16g00625 Cma-Chr16:3222668 2.98E-171 dispersed
Cma12g00458 Cma-Chr12:2402740 Cma05g00256 Cma-Chr5:1077542 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g966 Blo01g01568 Blo12g00904 Bda01g00524 Bda03g00265 Bpe02g00384 Bpe04g00219 Bma04g00213 . Cmo05g00261 Cmo12g00407 . . . Car12g00432 . . Cpe07g00409 Bhi04g00188 . . . Hepe10g0624 . . Cla08g01472 Cam08g1960 Cec08g1535 Cco08g1673 Clacu08g1650 . Cre08g1435 Cone4ag1919 Cone7ag1831 . . . . . Cme03g01938 . . . . . . . . . . . Cma12g00458 Cma05g00256 Car05g00213 . Cpe11g00211 . . . . . . . . . . . . . . . Lsi08g01382 Csa02g02069 Chy03g01443 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002586 4 2 2 1 2 1 3 1 1 2 1 1 4 2 2 4 1 3 3 1 2 1 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00458 Cma_Chr12 FPKM 51.449821 48.714226 35.941257 39.55764 39.029633 48.587769 36.673866 41.230644 42.190887 35.727318