Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00463 ATGTCTCGTTCGCGCGGTTTCTTTCAAGCTTGTACAGCGATTGTGATTTGTGTGCTCGTGGCGGAGTTTACGGCGGCGATGGCGAAAACGGCGATTCTGATCACTGTCGATCAATCCGGTAGAGGAAATTTTACGAAGATTCAAAACGCGATTGATGCGGTGCCAGATAATAATTTGGAGGAAGTGTTTATTGCTGTGAAGCCAGGGATTTACAGAGAGAAGGTGACTGTACCAGCGAATAAACCGTACATTACGATCAGTGGAAGAAGATCGTCTGATACTATCATTACTTGGAATGATAGCAGAAATACATATAATTCCGCAACTCTTGCGGTTTTGGCCTCTGATTTCGTTGGACGATACCTCACGATTCAGAACGGGTTCGGGGCGGGTGCGCAAGCGGTGGCATTACGGGTATCCGGAGACCGAGTCTCATTTACCGCCTGCAGATTTCTGGGTCATCAAGACACTCTGCTAGACGACATCGGCCGCCATTACTACAAAAGCTGTTACATAGAAGGAGCCACCGACTTCATCTGCGGAAACGGGGCTTCACTTTTCGAGAATTGCCATCTGCATTCGGTGTCAGACTCCGTCGGGACCATCACGGCTCAACGGAGAGAGTCGCCGTCGGAGAACACTGGGTTCGTGTTTATGGGTTGCAAGATCACCGGAATCAACTCCGCCGTTCTGGGTCGGCCGTGGGGGGCGTTCTCTAGGGTCGTGTTTGGATTCACTTACATGTCTGATGTTATTCTCCCTGAGGGTTGGGATAACTGGCAAGACCCATCCAAACAGAGCACTGTGTACTATGGACAATACCGATGTTACGGAAAAGGAGCCAATCCATCCAGAAGGGTACCATGGTCATTTTCCAACATGACCACCCAAGAAGCTGCACCATTCTTCTCCAAAACCTTCATTGGCGCTGCACATTGGCTCAGGCCTTTACCCACCAATTTCAAGAGAGCCTTCGCTTCCAAACCCTAA 990 49.7 MSRSRGFFQACTAIVICVLVAEFTAAMAKTAILITVDQSGRGNFTKIQNAIDAVPDNNLEEVFIAVKPGIYREKVTVPANKPYITISGRRSSDTIITWNDSRNTYNSATLAVLASDFVGRYLTIQNGFGAGAQAVALRVSGDRVSFTACRFLGHQDTLLDDIGRHYYKSCYIEGATDFICGNGASLFENCHLHSVSDSVGTITAQRRESPSENTGFVFMGCKITGINSAVLGRPWGAFSRVVFGFTYMSDVILPEGWDNWQDPSKQSTVYYGQYRCYGKGANPSRRVPWSFSNMTTQEAAPFFSKTFIGAAHWLRPLPTNFKRAFASKP 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2418868 2421073 + CmaCh12G004630.1 Cma12g00463 304953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00463 329 Pfam Pectinesterase 34 309 IPR000070 GO:0030599|GO:0042545
Cma12g00463 329 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 315 - -
Cma12g00463 329 Gene3D - 28 324 IPR012334 -
Cma12g00463 329 SUPERFAMILY Pectin lyase-like 29 321 IPR011050 -
Cma12g00463 329 PANTHER PECTINESTERASE 11-RELATED 14 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00463 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215800 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00463 Cma-Chr12:2418868 Cma15g01122 Cma-Chr15:7148399 8.87E-88 dispersed
Cma05g01070 Cma-Chr5:8476388 Cma12g00463 Cma-Chr12:2418868 2.42E-77 transposed
Cma17g00104 Cma-Chr17:506504 Cma12g00463 Cma-Chr12:2418868 9.94E-76 transposed
Cma12g00463 Cma-Chr12:2418868 Cma02g00394 Cma-Chr2:1995000 7.89E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g961 . . . . . . . . . Cmo12g00413 . . . Car12g00436 . . Cpe07g00413 Bhi04g00183 . . . Hepe10g0628 . . Cla08g01478 Cam08g1965 Cec08g1540 Cco08g1677 Clacu08g1655 . Cre08g1439 . . Cone17ag1350 Cone20ag0134 . . . Cme03g01944 . . . . . . . . . . . Cma12g00463 . . . . . . . . . . . . Cla11g00409 Cam11g0456 Cec11g0451 Cco11g0442 Clacu11g0580 Cmu11g0438 Cre11g0920 . Csa02g02065 Chy03g01447 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00463 Cma_Chr12 FPKM 8.695436 9.445751 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0