Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00469 ATGGCATCAAATACTTTTAGATCTTCAGGCAGTTCAAGCTCCACATGGACGCCTAAGCAAAACAAAAAATTTGAGGATGCTCTGGCTTTTTACCCCGAGGACACACCAGACCGGTGGCAAAAAGTGGCCAGGGCCGTAGGTGGAAAAACAGCCGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCACGATCTGATGCATATAGAATCTGGAAAGGTTCCTCTTCCCAAATACAAGCCCATTACATCCAACAGTATAGTGTGTGGTGATGAGCAGAGGCTCATGAAAAATCTAAAGCTCCAATAA 306 44.44 MASNTFRSSGSSSSTWTPKQNKKFEDALAFYPEDTPDRWQKVARAVGGKTAEEVKRHYDILVHDLMHIESGKVPLPKYKPITSNSIVCGDEQRLMKNLKLQ 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2436526 2438011 + CmaCh12G004690.1 Cma12g00469 304959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00469 101 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Cma12g00469 101 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Cma12g00469 101 SMART sant 12 64 IPR001005 -
Cma12g00469 101 CDD SANT 15 58 IPR001005 -
Cma12g00469 101 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Cma12g00469 101 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Cma12g00469 101 Gene3D - 7 75 - -
Cma12g00469 101 PANTHER PROTEIN RADIALIS-LIKE 3 1 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00469 - - - csv:101216277 167.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00250 Cma12g00469 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00469 Cma-Chr12:2436526 Cma01g01911 Cma-Chr1:12467511 4.14E-31 dispersed
Cma12g00469 Cma-Chr12:2436526 Cma12g00474 Cma-Chr12:2468002 8.10E-29 proximal
Cma12g00469 Cma-Chr12:2436526 Cma20g00850 Cma-Chr20:4067706 8.72E-30 wgd
Cma12g00469 Cma-Chr12:2436526 Cma05g00250 Cma-Chr5:1056205 8.01E-58 wgd
Cma12g00469 Cma-Chr12:2436526 Cma09g00153 Cma-Chr9:656927 1.45E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g955 Blo01g01565 . Bda01g00526 . Bpe02g00387 . . Bma01g02325 Cmo05g00255 Cmo12g00417 . . . Car12g00441 . Cpe06g00108 Cpe07g00418 Bhi04g00176 . . . Hepe10g0632 . . Cla08g01482 Cam08g1970 Cec08g1545 Cco08g1682 Clacu08g1660 . Cre08g1444 Cone4ag1916 . . Cone20ag0135 Lsi04g01670 Csa03g04216 Chy04g00504 Cme03g01950 . . . . . . . . . . . Cma12g00469 Cma05g00250 . Car09g00135 Cpe11g00206 . . . . . . . . Cla05g01935 Cam05g2078 Cec05g2091 Cco05g2142 Clacu05g2073 Cmu05g1949 Cre05g2069 . Csa02g02060 Chy03g01452 Cme04g00560
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013775 0 1 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 0 0 0 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35985 PF00249 Myb_DNA-binding 6.70E-07 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00469 Cma_Chr12 FPKM 6.176136 7.872412 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0