Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00477 ATGGATGATGAACTTCAGCTTGCAAGATTCGCGCATCGCCAGCCTCGTGTTAAAGCTTACTCATTGCCTTGGCTTGATTTGAGAGTGTTCTATGTTAGGATCAGTAATTTCCAAGTAGACAGCTTGACGCCCGAGTTCCTCACGCTCAACCATATCCCTCTCATCCCGGACACCCTTTTTGAAGTCAATGGCGTTAGGAGTAGTAGTCGCTCGGAGGGAGTCTCTTCCTCTCTGAGGAGAGATAGAGCTGATAAGGAATCAGAAGAAGCTACTTTTGTGACTACTGACCATATAAGGTTTAGTGGAAGTGTAAAATTTGAGGTATATGATAAGGAAGATTTGATTCTTTCTGGGGTTTTGGAGATGTTGGATTCCAATGGTTTATTAGGTGAATCCAAAAGCAATGCAAAGAGGTGGAGCATCATGAGTTGTAAGTCAAAGTTGGGTGGCGGGCTCTTGAAGGGAAAGCAGCATATGATTGGAGGTGAAACCCCGTCCCCGATGATCGACGTTTATATAGCTGGTAGCGTCTCTGGAAGTCCTATCATCTTGACCAAAACTTTGCAGCTAAGCTCCCGAAAGAAGCAGAGTTGGAAATCCATGTTGGACGCCGTTCCGGAGTCTGGGACGCCTGATTCTAATGAAGATCAATTTCCAGAATATGATTTACAGGACATTGACAACAGCGACGATTACAGCAACATGTACTGGAAGAGGAGAGAATATTTAGACGGTGAAGATGGTGAACTCTCCTGGTTCAATGCAGGTGTGAGAGTTGGTGTTGGTATAGGGCTCGGTGTTTGTGTCGGTATTGGTGTAGGAGTTGGTTTGCTCGTCCGTACCTACCGAGCCACTACTCGGAACATCACGAGGCGATTCGCGGCATTTTCCTCTCTCTCTCTCTCTCTCAGGTTTGTTACTGAGATTACGAAGGCTCATGTTGGGGACATTGACAAGACCCATTTGCGTGATTTGATGAGCGATGCTGCTAGATGCAAATCCTTGATGGTTGAGTACGATGGATTGTTGTTGGATTATTCTCGACAACGGGCCACCCTTGACACCATTGGAAAGCTATTCAAGTTGGCAGAGGCGGCGAATCTCAAGGAAAAAATTAATCGGATGTTCAATGGTGAACATATAAACAGCACTGAAAACAGGGCAGTGCTGCATGTTGCTCTTCGTGCTTCAAGAGATGCAACAATACAGAGCGACGGAAAGAATGTTGTGCCTGATGTTTGGAAAGTTCTTGATAAGATACAGGAGTTCTCTGAGAGAGTTCGCAATGGTTCTTGGGTTGGAGCCACAGGAAAACCTCTGAAGGATGTTGTTGCAATTGGCATTGGTGGCAGCTTCTTGGGGCCTCTGTTTGTGCATACTGCACTTCAAACAGATCCAGAGGCTATTAAGTCTGCAGAAGGGCGTCAGTTACGTTTTCTTGCTAATGTGGATCCCATTGATGTGGCGAGAAATATCACTGGTTTAAGCCCTGAAACTACTTTGGTTGTGGTTGTTTCAAAGACTTTTACCACTGCTGAAACTATGTTAAATGCCCGGACTCTAAGGGAGTGGATTTCTGCTGCTCTTGGGCCTTCAGCTGTTGCAAAGCATATTGTAGCAGTTAGCACAAACCTCCCGCTTGTAGAGAAGTTTGGTATTGATCCTAACAATGCCTTTGCATTCTGGGACTGGGTCGGTGGACGATTCTTGAAGGGAGCTTCAAGCATTGACCAGCATTTCTACTCCTCACCTTTTGAGAAAAATATTCCAGTAAGTATCGATGAATCTAAACAAAGTAAACTTGTTGCAAGTGATAAAGTCCCTACTGCGTTCCTTATTCTTGTGGTTTTGTGCGTTATGGTGCTTTTGGGATTGTTGAGCGTCTGGAATGTTTCGTTTCTTGGCCATGCAGCGAGAGTTAGCATGGAGAGTAATGGCAAGGGTGTTTCAATTGATGGGATTCCACTCCCTTATGAGGCCGGCGAAATTGACTTTGGGGAACCTGGAACTAACGGCCAACACAGTTTTTACCAATTGATTCACCAAGGACGTGTTATTCCTTGCGATTTTATCGGTGTTGTAAAGAGCCAGCAACCTGTTTACTTAAAAGGTGAGGTTGTGAGTAACCATGATGAGCTCATGTCCAACTTTTTTGCACAGCCAGATGCCTTAGCCTATGGGAAGACTCCCGAACAATTGCGTAAGGAGAATGTTCCAGAGCATCTTATTTCCCACAAGACATTTTCTGGCAACCGGCCTTCTCTTAGCATTCTTCTTCCATCATTGAATGCTTACAACATTGGTCAGGCAAGTTCGGATGTCCCATCTGATCTTCCCACCCTTCTACCTAGAATTTAA 2358 45.08 MDDELQLARFAHRQPRVKAYSLPWLDLRVFYVRISNFQVDSLTPEFLTLNHIPLIPDTLFEVNGVRSSSRSEGVSSSLRRDRADKESEEATFVTTDHIRFSGSVKFEVYDKEDLILSGVLEMLDSNGLLGESKSNAKRWSIMSCKSKLGGGLLKGKQHMIGGETPSPMIDVYIAGSVSGSPIILTKTLQLSSRKKQSWKSMLDAVPESGTPDSNEDQFPEYDLQDIDNSDDYSNMYWKRREYLDGEDGELSWFNAGVRVGVGIGLGVCVGIGVGVGLLVRTYRATTRNITRRFAAFSSLSLSLRFVTEITKAHVGDIDKTHLRDLMSDAARCKSLMVEYDGLLLDYSRQRATLDTIGKLFKLAEAANLKEKINRMFNGEHINSTENRAVLHVALRASRDATIQSDGKNVVPDVWKVLDKIQEFSERVRNGSWVGATGKPLKDVVAIGIGGSFLGPLFVHTALQTDPEAIKSAEGRQLRFLANVDPIDVARNITGLSPETTLVVVVSKTFTTAETMLNARTLREWISAALGPSAVAKHIVAVSTNLPLVEKFGIDPNNAFAFWDWVGGRFLKGASSIDQHFYSSPFEKNIPVSIDESKQSKLVASDKVPTAFLILVVLCVMVLLGLLSVWNVSFLGHAARVSMESNGKGVSIDGIPLPYEAGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVVKSQQPVYLKGEVVSNHDELMSNFFAQPDALAYGKTPEQLRKENVPEHLISHKTFSGNRPSLSILLPSLNAYNIGQASSDVPSDLPTLLPRI 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2481904 2492030 + CmaCh12G004770.1 Cma12g00477 304967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00477 785 Hamap Glucose-6-phosphate isomerase [pgi]. 339 785 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 CDD SIS_PGI_1 414 569 IPR035476 -
Cma12g00477 785 SUPERFAMILY SIS domain 304 592 IPR046348 GO:0097367|GO:1901135
Cma12g00477 785 SUPERFAMILY SIS domain 621 769 IPR046348 GO:0097367|GO:1901135
Cma12g00477 785 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 313 769 - -
Cma12g00477 785 Pfam Phosphoglucose isomerase 345 769 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 Gene3D - 430 562 - -
Cma12g00477 785 PRINTS Glucose-6-phosphate isomerase signature 750 768 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 PRINTS Glucose-6-phosphate isomerase signature 559 577 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 PRINTS Glucose-6-phosphate isomerase signature 443 462 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 313 769 IPR001672 GO:0004347|GO:0006094|GO:0006096
Cma12g00477 785 Gene3D - 307 409 - -
Cma12g00477 785 CDD SIS_PGI_2 642 769 IPR035482 -
Cma12g00477 785 Gene3D - 568 772 - -
Cma12g00477 785 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 320 769 IPR001672 GO:0004347|GO:0006094|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00477 K01810 GPI, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9] - csv:101217944 790.801
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00235 Cma12g00477 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01084 Cma-Chr6:7297367 Cma12g00477 Cma-Chr12:2481904 1.72E-49 dispersed
Cma12g00187 Cma-Chr12:860516 Cma12g00477 Cma-Chr12:2481904 8.10E-10 dispersed
Cma12g00477 Cma-Chr12:2481904 Cma14g02065 Cma-Chr14:14342559 1.15E-63 dispersed
Cma01g01906 Cma-Chr1:12445489 Cma12g00477 Cma-Chr12:2481904 2.10E-75 wgd
Cma12g00477 Cma-Chr12:2481904 Cma05g00235 Cma-Chr5:997797 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g932 Blo01g01559 . Bda01g00534 . Bpe02g00396 . . Bma01g02316 Cmo05g00243 Cmo12g00427 . . . Car12g00451 . . Cpe07g00429 Bhi04g00254 . . . . . . Cla08g01496 Cam08g1986 Cec08g1561 Cco08g1698 Clacu08g1676 . Cre08g1459 Cone4ag1905 Cone7ag1820 . . . . . Cme03g01964 . . . . . . . . . . . Cma12g00477 Cma05g00235 Car05g00195 . Cpe11g00194 . . . . . . . . . . . . . . . Lsi08g01401 Csa02g02045 Chy03g01468 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004710 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00477 Cma_Chr12 FPKM 20.868231 23.087555 17.092634 17.045408 17.530815 17.023726 17.567474 31.569775 31.661785 31.278852