Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00480 ATGAAATCCGAGCTTTCACCGACAATGGCGGCTCCGAACAAGGAGACCCCATGTTTCCTATCTAGAAAGGCTCGCTACAAGTTCTGGGCCTTGGCCGCCATTCTTCTCCTCGCCTTCTGGTCCATGTTCACCGGCTCCGTCTCACTCAAATGGTCCGCCGCAACCTTCGCCAAACTCTACGACGGCCCCCGCAAGCCGATCTTTGATGATCTTGATATTTTGGAAGTTGAAGAGCGGGAGAGGGTTGTCCGCCATATGTGGAATCTGTACACCCACGGCGGCGGCGGCGGCCGGTTGCCTAGATTTTGGTCGGAGGCTTTTGAAGCGGCGTACGAGGAATTGATCGGTGATGTTCCTGCTGTTCGTGATGTTGCACTTTTGGAGATCGCTAGAATGTCTCTGCGATCTCTTCAAGTCGACCCAATTCCGACCAAATCCAAGAGTGAAAACAGATTGAAAAGCTCAAAACAAAGGCAATTGGGTGAGTAG 489 52.35 MKSELSPTMAAPNKETPCFLSRKARYKFWALAAILLLAFWSMFTGSVSLKWSAATFAKLYDGPRKPIFDDLDILEVEERERVVRHMWNLYTHGGGGGRLPRFWSEAFEAAYEELIGDVPAVRDVALLEIARMSLRSLQVDPIPTKSKSENRLKSSKQRQLGE 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2503535 2505115 - CmaCh12G004800.1 Cma12g00480 304970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00480 162 Pfam Protein of unknown function (DUF1195) 18 141 IPR010608 -
Cma12g00480 162 PANTHER PROTEIN, PUTATIVE-RELATED 15 157 - -
Cma12g00480 162 PANTHER OS03G0411600 PROTEIN 15 157 IPR010608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00480 - - - csv:101218892 224.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00231 Cma12g00480 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00495 Cma-Chr7:2135581 Cma12g00480 Cma-Chr12:2503535 5.12E-31 dispersed
Cma12g00480 Cma-Chr12:2503535 Cma05g00231 Cma-Chr5:984273 8.13E-87 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g929 . . . . . . . . Cmo05g00240 Cmo12g00429 . . . Car12g00453 Sed11g1025 . Cpe07g00431 Bhi04g00260 Tan02g1947 Cmetu03g1126 . Hepe10g0653 . Lcy13g1996 Cla08g01499 Cam08g1989 Cec08g1564 Cco08g1701 Clacu08g1679 . Cre08g1462 . . Cone17ag1334 Cone20ag0143 . . . Cme03g01967 Blo17g00805 . . . . Bpe05g00084 . Bma05g00113 . . . Cma12g00480 Cma05g00231 Car05g00193 . . . . . . . . . . . . . . . . . Lsi08g01404 Csa02g02042 Chy03g01471 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010000 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00480 Cma_Chr12 FPKM 6.114837 11.214628 11.901405 12.154349 14.181599 10.751672 12.543767 10.611915 10.369989 13.321905