Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00481 ATGGAGTTAAGAAGTTTCAGTCATTTTCATCATATCCATGCCATTAAAGGGGGTATGATGCCTAAAGTTCTAAACATCAACCGTGGAAAGCCTGCAATGGTATTTAAGAAGCTTACTGACATATATGAATCTATATATGACAAAGCTCAAGAATCACTCCCAACACGATGGTCAAGAGAAGGTTTAGAAGGAAATATTCGTGATGGATGTGAATCGAAGATGCAAACCCAAGTTCTTTATGCAGAAAGAAAACTATTCAATGATGAGCCTGAAGTTTCTGATTCTGACCGTGAAGGTGATAGTGATACTGAAGTACAAAAGAGTGATGTAGAAGCTGATAGCATGACTATAAAGCAGATGATGGAAAGCTGCAAGAAAAGAAAGCTGAGGCAGTCAAATTTTGTTGACTCAAGCAAGGAAAAGCCGAGAACATGCTCCAGACGAGAACTAAATCATTCATGCTTGTTATCAGATGAGGATGATAGTGATCTTGATGTTGCTCTTAGCATCTGGCAATCCAAACTTTCAAAACGCAAAAAATTGAAAACCAAATGTGACGAAAGCAAAATATCTACTAGCTCACTGCAAGGCCAAACAATTGAAAATTCTGATCCAATCAATATTGATCAGGATCTCCTTCCATCTAGTTCAGACCTAGCCATCCCAGTGGACATTAAAGTTGAAACTCCTGAAACTGACGTGACAGAAATCCAAAACACAAACTGCATTACGGTTGAGTTGTCTCTACTCTGTGATGAAAATGTAAACTCGTGTCTGAGTTCTGGGCCTATTGGAACCGATGAATTATTTTTTGGTCTAGAGTTGACAGCATCTGAGAAAGAACCTGAATATGGTGTTCTAAACTATGTATCTCTTGAAAATGTGGAATGTGATGAATCCAGACCTCTTCAGATGGTAGGGGAATCTAGCACTGAGTGCGTGAGTGAAGATAACCTGGAGGTACACAAACCCCAACATTCAGATTTTCCTGCATCAGAGACTATGGAGGGACAATGTACCCCAAGTTTTGTATCCAATGATAGCATATCAGAAGCTATTTCCCTGGCTGAGGAGCAGTGCTTTGGCATTCATATTTCACAAGCTAAATCCATTACACACGAGGTCATATGTCAGAAAAATAGTGAAGATATGTCAGCAATTTCCATGACCGGGGAACAGTTCTCTGACACTCATATTTCAGAAGGTAAACCCTTTACAGATGAGGTCATATGTCCTACTAATGGTGTAATCTTCACGTATTTGAATGGAATGGCTGATCTGAATAGCCTCCAACTCCCAGAGATGAGTCTTGGAGCTGAAGTACGTTTAACCGAGAATAGGTATAAAGACAGGTTGGCATTTGATAATGAAAAAGGTATTCCAACGGAATCTACCAGTGATTGTAACTTAAGCTCTGAACATGGGGGAAGTATTTCATCAAAATCTACCAGCGATTGTAACTTAAGCCCTGATCATGGAGAGAGTGTTTCAACAAATTCTATCAGTGATCGTAACTTAATTCCTGATCAGCATTTGATATCTATTGACGAATGTCCAGCTAAGGAGAAACAACCACAAATGTCTGATTGTTCTGATCCAGAAAGAAATACTTCACCAGATTTTCATCTCAATGGTTCTACGGATAAATTCAATCAAATTGAAGAACCTCAACGTCATCCAACAAGGCTGCAATCAACGAGAACAACCATTTCTCCAACATCTCAGGAAAGATTGTCCAAGGCTATGAAGTCTATGCAGTTACAAGATAAAGAATGCAAAACATGCGGTGGCAAACCATATTTCAAACAAATTAAGTACAAGGTTGGCACAGCTGAAGGGTGTGACCCGATGAAGAGAGTGTATTCCGATACATATCACGAGCAAAATACAAGGAAATCAAAGAAGAGAAGTCTTCACTCAACAAGCACCACTAAAGCTTCTCACGCTCATGCCAGCATGAGAAGCTCTACTGTCCAGAGTTGTTCAGAGAGCGCCATTGCATTCACAGAAAGACAGATGCAGGACATAGAGTGTCTTGCTCTGAAGCTTACAACTCAGTTAAAGTCAATGAAAGCAATTGTAGAAGACAGAATTCACGTTGAAGGCAACAAAGCTACAAGTTACAAGTTTAACACGGATGAGGTGAGAACAGCCATTGCTGATGCAACGAAAGCGGAAGCAAGTGCAAAGAAATGGCTTTCCATAATGTCGAGGGACTGTAACCGATTTTGTAAAATAATGAAAACAAGTGGGCATGGTTCAAATGCTTCTCCAACTTCAGCTCAGAAGTTGAAGAGGAAGATTACATTTGCTGATGAAGCTGGTGGAGAGCTTTGTGAAGTTAGGTTGTTCGAGGACGACATGAACGCCGAATCTTCCGTGGAGACCAGTCCCGAAAAAGTACGAATCAGTTGA 2415 40.25 MELRSFSHFHHIHAIKGGMMPKVLNINRGKPAMVFKKLTDIYESIYDKAQESLPTRWSREGLEGNIRDGCESKMQTQVLYAERKLFNDEPEVSDSDREGDSDTEVQKSDVEADSMTIKQMMESCKKRKLRQSNFVDSSKEKPRTCSRRELNHSCLLSDEDDSDLDVALSIWQSKLSKRKKLKTKCDESKISTSSLQGQTIENSDPINIDQDLLPSSSDLAIPVDIKVETPETDVTEIQNTNCITVELSLLCDENVNSCLSSGPIGTDELFFGLELTASEKEPEYGVLNYVSLENVECDESRPLQMVGESSTECVSEDNLEVHKPQHSDFPASETMEGQCTPSFVSNDSISEAISLAEEQCFGIHISQAKSITHEVICQKNSEDMSAISMTGEQFSDTHISEGKPFTDEVICPTNGVIFTYLNGMADLNSLQLPEMSLGAEVRLTENRYKDRLAFDNEKGIPTESTSDCNLSSEHGGSISSKSTSDCNLSPDHGESVSTNSISDRNLIPDQHLISIDECPAKEKQPQMSDCSDPERNTSPDFHLNGSTDKFNQIEEPQRHPTRLQSTRTTISPTSQERLSKAMKSMQLQDKECKTCGGKPYFKQIKYKVGTAEGCDPMKRVYSDTYHEQNTRKSKKRSLHSTSTTKASHAHASMRSSTVQSCSESAIAFTERQMQDIECLALKLTTQLKSMKAIVEDRIHVEGNKATSYKFNTDEVRTAIADATKAEASAKKWLSIMSRDCNRFCKIMKTSGHGSNASPTSAQKLKRKITFADEAGGELCEVRLFEDDMNAESSVETSPEKVRIS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2506075 2511024 - CmaCh12G004810.1 Cma12g00481 304971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00481 804 MobiDBLite consensus disorder prediction 642 656 - -
Cma12g00481 804 MobiDBLite consensus disorder prediction 88 114 - -
Cma12g00481 804 MobiDBLite consensus disorder prediction 625 656 - -
Cma12g00481 804 PANTHER EXPRESSED PROTEIN 1 797 - -
Cma12g00481 804 PANTHER EXPRESSED PROTEIN 1 797 - -
Cma12g00481 804 MobiDBLite consensus disorder prediction 459 506 - -
Cma12g00481 804 MobiDBLite consensus disorder prediction 454 506 - -
Cma12g00481 804 MobiDBLite consensus disorder prediction 554 576 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00481 - - - cmax:111496554 1580.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00230 Cma12g00481 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00481 Cma-Chr12:2506075 Cma05g00230 Cma-Chr5:979098 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g925 . . . . . . . . Cmo05g00238 . . . . Car12g00454 Sed11g1023 . Cpe07g00432 Bhi04g00263 Tan02g1945 Cmetu03g0909 . Hepe10g0655 . Lcy13g1998 Cla08g01502 Cam08g1992 Cec08g1567 Cco08g1704 Clacu08g1682 . Cre08g1465 . Cone7ag1815 . . . . . Cme03g01969 Blo17g00806 . Bda08g01290 . . . . Bma05g00112 . . . Cma12g00481 Cma05g00230 Car05g00191 . Cpe11g00191 . . . . . . . . . . . . . . . Lsi08g01407 Csa02g02038 Chy03g01474 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008634 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00481 Cma_Chr12 FPKM 2.210978 2.6735 1.577015 1.636994 8.200881 7.694017 7.705238 0.61242 0.482799 0.674493