Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00482 ATGGCGAATCCGCGTAAAGGCAAGCTCCTTTTTACCTATTTTCTATTTTTTTTTGCTATTCCCCGTGTTTCTAGGGTTTTTGTCTGCAATTCTAGCTCCCTTGAGCTGAATCAACCTGAATCTGATGTCCCCATTAAAATTAGACAGCATGTTTTACTGAAAAATCTTGAGGAGTTAGTGAAAAACCTTAGCGATGTAGTTTCTAAATTGGAGATGAGATTATCTGATATTCCCGCGAAATTGAACACTGAGGTAGGTAGTTTAGGCGGTGGAAAAGGACTGAGTGACGGCGGAGATGGCGGTTTGGATAATGGAATTCAGGATGGGGGTGGAGGTAGAGCTGTTACAGTGACAAAATACAGTCCATTTTGGTCGGAGAGGTTCCATTTTTTGTCGGCTGTGAAGCTGGATTTTGATGCTACTTGTATCAATGTCCTGCCGCTTAGGGATTTCGAGGGACATAGCAAGTATGTTGCGGTAGGAGACGAGAGAGGGCGAGTTTATGTCTTTATGAGAAATGGGGATGTTGCGGTTGAGCTTTGTACAGTGTCTGATTCGCCGATTACGTCGATGCTTTCGTATATGTCTGTTTATAAGAATGAGACCCTTTTGGTTACTGGCCATAAGAATGGGGCGATCTTGATGCATCGGATTTGGGAGAGATCGAATGGGGAGGAGTTGAATTCGGTTTTCATGGAACATGTTGTGGAATTTGTGGGGGAGGATGAGTCGCCAATTTCCATCTTGGAAGTGCATTATGTTGGGAGGATTAGGTACATTTTGTCTTCGGATGTTCGGGGGAAAATCAAGGTTTTTAGAGAAGACGGGACGGTTTATGGTTCGGTCATGCCTATGAGTAGGCCAATAGCGTTCTTGAAGCAGAGGCTCTTGTTCTTGACCGAAAGTGGCGCTGGCTCGTTGGATTTGAGAAGTATGAAACTTAGGGAGTCGGAATGTGAGGGATTGAATCATTCTCTTGCTCGAAATTACGTGTTTGATGCCGTGGAGCGATCGAAGGCGTATGGTTTTACATCAGATGGGGACTTGATTCATGTCTTGTTGTTGGGAGATATACTGAACTTTAAATGCAGGGTTAGATCAAAACGGAAGTTCGAGCTTGATAAACCACTAATCTTTCAAGCAATCAAGGGCTATTTGCTTGTTATCAGCAATGAGAAGGTTCATATTTTCAACGTATCGTTGCAGCATTACGTTCGAGTCGGTGCACCGAGGCATCTATTTTCTGCTGGTCTAGACGAGATCAGGTCATCTTTCTTGAACTATCAGAATTTGGATTCAGAGTCTGGAGGAAAGTTTATACCATTAATATCGAGTGACCATGAAAAGCTTGTTGTTCTTGGACTTGGGGGCGGATATGTCGGATTGTATCGCTCGAATCTTCCGATCTTTAAAGGGGAGTTCAATACAATGCTATGGACAAGCCCTGTTCTCTTTTTCATTCTCTTTCTGTTTGGAGCTTGGCATTTCTTTGCAAAGAAGGAGGCGCTCACGTCCTGGGGACCGGATGACCCTTTTACTGCAACTTCACCGACTACCGGAGCTCCACTCGGAACTGGATCCAGCGAGAGAGCATCTTTCATTGACGCTCCTTCGAGAAGTACTGAAATGATGGATCTTAGAGGTGGTGGTGGTGGCCTAAGAGGACCACCGCGACGTTATGGTTCTCCTACAGGGTATCCTGGTGGGGCAACGAGTTCGTTTAGGCCAGCTACGACAAGTGACCATAACTCAAGACCAGCTGCAGTTGATCCAAATTATCGAGCAGCTTCGGAGTTAAAATTCAGAGGCTCGCCTTTAGAACCTCCGGGATTTCCGAAACGACGGGAGCCTCTATTTGCAAACAATCAGGTGGTGGATGAAAGCAGTTGA 1890 45.13 MANPRKGKLLFTYFLFFFAIPRVSRVFVCNSSSLELNQPESDVPIKIRQHVLLKNLEELVKNLSDVVSKLEMRLSDIPAKLNTEVGSLGGGKGLSDGGDGGLDNGIQDGGGGRAVTVTKYSPFWSERFHFLSAVKLDFDATCINVLPLRDFEGHSKYVAVGDERGRVYVFMRNGDVAVELCTVSDSPITSMLSYMSVYKNETLLVTGHKNGAILMHRIWERSNGEELNSVFMEHVVEFVGEDESPISILEVHYVGRIRYILSSDVRGKIKVFREDGTVYGSVMPMSRPIAFLKQRLLFLTESGAGSLDLRSMKLRESECEGLNHSLARNYVFDAVERSKAYGFTSDGDLIHVLLLGDILNFKCRVRSKRKFELDKPLIFQAIKGYLLVISNEKVHIFNVSLQHYVRVGAPRHLFSAGLDEIRSSFLNYQNLDSESGGKFIPLISSDHEKLVVLGLGGGYVGLYRSNLPIFKGEFNTMLWTSPVLFFILFLFGAWHFFAKKEALTSWGPDDPFTATSPTTGAPLGTGSSERASFIDAPSRSTEMMDLRGGGGGLRGPPRRYGSPTGYPGGATSSFRPATTSDHNSRPAAVDPNYRAASELKFRGSPLEPPGFPKRREPLFANNQVVDESS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2513613 2515502 + CmaCh12G004820.1 Cma12g00482 304972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00482 629 Coils Coil 53 73 - -
Cma12g00482 629 PANTHER OS06G0115200 PROTEIN 1 628 IPR045288 -
Cma12g00482 629 MobiDBLite consensus disorder prediction 511 629 - -
Cma12g00482 629 SUPERFAMILY WD40 repeat-like 147 284 IPR036322 GO:0005515
Cma12g00482 629 MobiDBLite consensus disorder prediction 511 535 - -
Cma12g00482 629 MobiDBLite consensus disorder prediction 566 586 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00482 - - - csv:101218181 1008.44
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00228 Cma12g00482 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00482 Cma-Chr12:2513613 Cma05g00228 Cma-Chr5:973634 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g922 . . . . . . . . Cmo05g00237 . . . . Car12g00455 Sed11g1022 . Cpe07g00433 Bhi04g00264 Tan02g1944 Cmetu03g2300 . Hepe10g0656 . Lcy13g1999 Cla08g01503 Cam08g1993 Cec08g1568 Cco08g1705 Clacu08g1683 . Cre08g1466 Cone4ag1900 Cone7ag1813 . . . . . Cme03g01970 Blo17g00807 Blo18g00820 . Bda01g01490 Bpe02g01686 . Bma01g00766 . . . . Cma12g00482 Cma05g00228 Car05g00190 . Cpe11g00190 . . . . . . . . . . . . . . . Lsi08g01408 Csa02g02037 Chy03g01476 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003112 2 2 1 1 1 2 2 2 2 2 2 2 2 1 2 1 2 2 2 2 2 1 1 2 2 3 1 2 2 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00482 Cma_Chr12 FPKM 14.095239 17.049471 20.105965 20.160147 9.054385 9.414014 9.474134 25.265699 27.054071 30.218231