Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00483 ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGCTTACGGCATCTTCCACGCAAGGAGTTGAACTCGAGAGCATGGACGCCGTGGCTCCGCTGAAGAAGAAGCGGAATCTACCAGGAATGCCAGATCCTACGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCTACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGATCAGAACTTGCAGCTTCACCGACGCGGCCACAACTTGCCTTGGAAGCTCCGACAGCGGACGAGCAATGAGATTCGTAAACGAGTTTACGTCTGTCCGGAGGCGTCTTGTGTCCATCACAATCCGGCTAGGGCACTCGGCGATCTCACCGGTATCAAAAAGCACTACTCCAGAAAGCACTGTGAGAAAAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAACAAGAGAGTATAGATGCGATTGCGGAACTTTGTTTTCTAGGAGAGATAGTTTCATCACGCATCGAGCCTTTTGCGACGCTTTGGTGTTCGCAAGCACGAATTCCAACGCGATGGTCCCCGCGGCAGCGGCAGTTGGTTCTTCGCCACCGGCGCCGCCACTGACGCCATCTACCACCGTGCTATCTCCTGCTCTGTCGATTCAAAGCTCAGAACCACCGGACAATCCCATCGGACCTCCGCCATTAACACCTCCAGTCACAGGCCTAACCTCACCCACCGCCTCCAACATAAACGGCTGTGGCATCAGTGGTGGTACAAGCGTTTTCGCTGGTGTATTTGCTTCTCCTCCTATTAGTGCCCAAAATCCACCCCATCAAATCACCACCTCCGGCAACCGGTCAGACGGCGTCAATAATCCCCAAACCACCGCCATTGAATCCACATCGCTCTCTCTCTCAATGTCTCTCTTCCTCTCCTGCACAGCCTCAGCCTCGGGCTCATCCCTCTTTCAGGAACATCCACCACATTACTCCTCATCACCCCAGCCCGCCGCCATGTCCGCCACCGCTTTACTACAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCCTCTTTTCTCCGAGGCTCCGGGCTCTCAATATCCCCGTCTCCCAGCCAAGCCACTTTTGCCTCCATGACGGCTGGGCTGGAACTTGGATTTGGAAACGAGCCTGCCACACGAGATCTCCTTGGACTTAGCATGGGCGGCGCAACCCCCGGCAGCGGTTTTTCGGGTCTTTTTACGTCCTTTGGTGAAGCTGCTGCACCTTACGGTGGCGGCGGCGGCGGCGGGAGTAATGGTTCGTAA 1338 55.83 MVSAENNSPTAALTASSTQGVELESMDAVAPLKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALVFASTNSNAMVPAAAAVGSSPPAPPLTPSTTVLSPALSIQSSEPPDNPIGPPPLTPPVTGLTSPTASNINGCGISGGTSVFAGVFASPPISAQNPPHQITTSGNRSDGVNNPQTTAIESTSLSLSMSLFLSCTASASGSSLFQEHPPHYSSSPQPAAMSATALLQKAAQMGVTASNAASFLRGSGLSISPSPSQATFASMTAGLELGFGNEPATRDLLGLSMGGATPGSGFSGLFTSFGEAAAPYGGGGGGGSNGS 445
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2520186 2522639 + CmaCh12G004830.1 Cma12g00483 304973
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00483 445 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 3 419 - -
Cma12g00483 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 419 - -
Cma12g00483 445 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cma12g00483 445 Gene3D Classic Zinc Finger 43 110 - -
Cma12g00483 445 Pfam Zinc-finger of C2H2 type 62 84 - -
Cma12g00483 445 Gene3D Classic Zinc Finger 116 193 - -
Cma12g00483 445 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cma12g00483 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cma12g00483 445 MobiDBLite consensus disorder prediction 1 22 - -
Cma12g00483 445 SMART c2h2final6 62 84 IPR013087 -
Cma12g00483 445 SMART c2h2final6 138 158 IPR013087 -
Cma12g00483 445 SMART c2h2final6 103 133 IPR013087 -
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00499 Cma-Chr7:2152878 Cma12g00483 Cma-Chr12:2520186 8.61E-122 dispersed
Cma12g00483 Cma-Chr12:2520186 Cma16g00651 Cma-Chr16:3386134 1.35E-116 dispersed
Cma18g00089 Cma-Chr18:406361 Cma12g00483 Cma-Chr12:2520186 2.76E-71 dispersed
Cma01g01894 Cma-Chr1:12396752 Cma12g00483 Cma-Chr12:2520186 1.63E-147 wgd
Cma12g00483 Cma-Chr12:2520186 Cma09g00169 Cma-Chr9:719687 7.14E-140 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35986 PF12874 zf-met 0.0031 CL0361 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00483 K25869 - csv:101217471 605.52