Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00483 | ATGGTATCGGCAGAGAACAATTCTCCAACGGCGGCGCTTACGGCATCTTCCACGCAAGGAGTTGAACTCGAGAGCATGGACGCCGTGGCTCCGCTGAAGAAGAAGCGGAATCTACCAGGAATGCCAGATCCTACGGCGGAGGTGATAGCTCTGTCGCCGAAATCGCTTCTAGCTACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGATCAGAACTTGCAGCTTCACCGACGCGGCCACAACTTGCCTTGGAAGCTCCGACAGCGGACGAGCAATGAGATTCGTAAACGAGTTTACGTCTGTCCGGAGGCGTCTTGTGTCCATCACAATCCGGCTAGGGCACTCGGCGATCTCACCGGTATCAAAAAGCACTACTCCAGAAAGCACTGTGAGAAAAAGTGGAAGTGCGAGCGGTGCTCGAAGAAGTACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGCGGAACAAGAGAGTATAGATGCGATTGCGGAACTTTGTTTTCTAGGAGAGATAGTTTCATCACGCATCGAGCCTTTTGCGACGCTTTGGTGTTCGCAAGCACGAATTCCAACGCGATGGTCCCCGCGGCAGCGGCAGTTGGTTCTTCGCCACCGGCGCCGCCACTGACGCCATCTACCACCGTGCTATCTCCTGCTCTGTCGATTCAAAGCTCAGAACCACCGGACAATCCCATCGGACCTCCGCCATTAACACCTCCAGTCACAGGCCTAACCTCACCCACCGCCTCCAACATAAACGGCTGTGGCATCAGTGGTGGTACAAGCGTTTTCGCTGGTGTATTTGCTTCTCCTCCTATTAGTGCCCAAAATCCACCCCATCAAATCACCACCTCCGGCAACCGGTCAGACGGCGTCAATAATCCCCAAACCACCGCCATTGAATCCACATCGCTCTCTCTCTCAATGTCTCTCTTCCTCTCCTGCACAGCCTCAGCCTCGGGCTCATCCCTCTTTCAGGAACATCCACCACATTACTCCTCATCACCCCAGCCCGCCGCCATGTCCGCCACCGCTTTACTACAGAAGGCTGCCCAAATGGGCGTCACCGCCTCCAACGCCGCCTCTTTTCTCCGAGGCTCCGGGCTCTCAATATCCCCGTCTCCCAGCCAAGCCACTTTTGCCTCCATGACGGCTGGGCTGGAACTTGGATTTGGAAACGAGCCTGCCACACGAGATCTCCTTGGACTTAGCATGGGCGGCGCAACCCCCGGCAGCGGTTTTTCGGGTCTTTTTACGTCCTTTGGTGAAGCTGCTGCACCTTACGGTGGCGGCGGCGGCGGCGGGAGTAATGGTTCGTAA | 1338 | 55.83 | MVSAENNSPTAALTASSTQGVELESMDAVAPLKKKRNLPGMPDPTAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEASCVHHNPARALGDLTGIKKHYSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDALVFASTNSNAMVPAAAAVGSSPPAPPLTPSTTVLSPALSIQSSEPPDNPIGPPPLTPPVTGLTSPTASNINGCGISGGTSVFAGVFASPPISAQNPPHQITTSGNRSDGVNNPQTTAIESTSLSLSMSLFLSCTASASGSSLFQEHPPHYSSSPQPAAMSATALLQKAAQMGVTASNAASFLRGSGLSISPSPSQATFASMTAGLELGFGNEPATRDLLGLSMGGATPGSGFSGLFTSFGEAAAPYGGGGGGGSNGS | 445 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2520186 | 2522639 | + | CmaCh12G004830.1 | Cma12g00483 | 304973 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00483 | 445 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 3 | 419 | - | - | |
| Cma12g00483 | 445 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 3 | 419 | - | - | |
| Cma12g00483 | 445 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
| Cma12g00483 | 445 | Gene3D | Classic Zinc Finger | 43 | 110 | - | - | |
| Cma12g00483 | 445 | Pfam | Zinc-finger of C2H2 type | 62 | 84 | - | - | |
| Cma12g00483 | 445 | Gene3D | Classic Zinc Finger | 116 | 193 | - | - | |
| Cma12g00483 | 445 | SUPERFAMILY | beta-beta-alpha zinc fingers | 61 | 159 | IPR036236 | - | |
| Cma12g00483 | 445 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 84 | IPR013087 | - | |
| Cma12g00483 | 445 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cma12g00483 | 445 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
| Cma12g00483 | 445 | SMART | c2h2final6 | 138 | 158 | IPR013087 | - | |
| Cma12g00483 | 445 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma09g00169 | Cma12g00483 | CCT | |
| Cma01g01894 | Cma12g00483 | CCT | |
| Cma09g00169 | Cma12g00483 | ECH | |
| Cma01g01894 | Cma12g00483 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00499 | Cma-Chr7:2152878 | Cma12g00483 | Cma-Chr12:2520186 | 8.61E-122 | dispersed | |
| Cma12g00483 | Cma-Chr12:2520186 | Cma16g00651 | Cma-Chr16:3386134 | 1.35E-116 | dispersed | |
| Cma18g00089 | Cma-Chr18:406361 | Cma12g00483 | Cma-Chr12:2520186 | 2.76E-71 | dispersed | |
| Cma01g01894 | Cma-Chr1:12396752 | Cma12g00483 | Cma-Chr12:2520186 | 1.63E-147 | wgd | |
| Cma12g00483 | Cma-Chr12:2520186 | Cma09g00169 | Cma-Chr9:719687 | 7.14E-140 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35986 | PF12874 | zf-met | 0.0031 | CL0361 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00483 | K25869 | - | csv:101217471 | 605.52 |