Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00488 ATGGCATCCAAATCTCCCCCGTCGTCAGCCGAGAAGCATAGAGATTTCTTCAATCATCTCGAAGCTTACCTCGCAAAGAGAGACGGCGTTGACAAGCTCTTGAAAATCTCCAGGTACGCCACCAAGATCATCCTCTCCTCTTCCGCCCTTCCCGAATCCCTTCCTCTCACGCAACGTCTCAAGAGCTTCGAGTCCAACGTCGGCGTCAGCCGTAAAGCCTTCCGCCTTGGGAAGTTCGTGCAGGACCTCAACGCTTTGAGAAACTCGCATTTTGAATCGAGCCAAGAACTTGTGCTCGCGATCGTCGCGTATGGCGGCGAGGGGATTTATTACTTCATCGAACAGTTTATTTGGTTGGTTAAAGCTGGTTTGATTGATAAACGATACTCTAGTCGTCTGCAGAAGATCAGTGGGTGGGCGGAATTTATTGGTTATATTGGGAGTATTTCGTTGAAATTTAGGGATTTCAATCAGATTGTTGAAGACGAGGCGTGTTTGAAAGCGAGTATGGATATTGCGGTGTCTAAGGGAGATGGAAATCGGGAAGAGGAAGAGAAGATGAAGAAGTTGCAGGCGAAAAAATTGATGAAGAAACTTTCAATCGTTCAAGACTTTGCCGATGGATTCATGGCGTTGGCTGACATTCGTGATGGGAATGGCCGGCTTTCAGGGCCACTTTTTCTATCTTGTGCTGGGCTTCTCTCGGCTTTGATTAGCACCCATAAGAACTGGATATCATGCTGA 744 47.45 MASKSPPSSAEKHRDFFNHLEAYLAKRDGVDKLLKISRYATKIILSSSALPESLPLTQRLKSFESNVGVSRKAFRLGKFVQDLNALRNSHFESSQELVLAIVAYGGEGIYYFIEQFIWLVKAGLIDKRYSSRLQKISGWAEFIGYIGSISLKFRDFNQIVEDEACLKASMDIAVSKGDGNREEEEKMKKLQAKKLMKKLSIVQDFADGFMALADIRDGNGRLSGPLFLSCAGLLSALISTHKNWISC 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2538169 2538912 - CmaCh12G004880.1 Cma12g00488 304978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00488 247 PANTHER PEROXISOMAL MEMBRANE PROTEIN 11A 9 247 - -
Cma12g00488 247 Pfam Peroxisomal biogenesis factor 11 (PEX11) 18 244 IPR008733 GO:0005779|GO:0016559
Cma12g00488 247 PANTHER PEROXISOMAL BIOGENESIS FACTOR 11 9 247 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00488 - - - cpep:111798495 450.669
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00226 Cma12g00488 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00488 Cma-Chr12:2538169 Cma05g00226 Cma-Chr5:963953 6.07E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g901 . . . . . . . . . Cmo12g00434 . . . Car12g00459 Sed02g1607 . Cpe07g00437 Bhi04g00270 Tan02g1939 Cmetu06g0284 . Hepe10g0662 . Lcy13g2003 Cla08g01509 Cam08g1998 Cec08g1573 Cco08g1710 Clacu08g1688 . Cre08g1471 . . . . . . . Cme03g01974 Blo17g00812 . Bda08g01296 . . . . . . . . Cma12g00488 Cma05g00226 Car05g00188 . . . . . . . . . . . . . . . . . Lsi08g01413 . Chy03g01480 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004435 1 1 1 1 1 2 2 2 2 1 1 2 2 1 1 2 2 1 2 2 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00488 Cma_Chr12 FPKM 27.068548 31.48538 20.520456 23.252609 16.985243 13.133069 14.454325 44.460503 47.866314 47.202396