Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00489 ATGAAGGGGATAGAGCGCTTGGGATCATGTACCCCCACCCCTCACGCAATCTTCGCTTCAGATCGCCGGGAAATGACCTCCGACGGGGCTACTTCTGCCTCCACTTGCCGCCGGAAGCCGTCATGGAGGGAGCGGGAGAATAATCGAACCAGAGAGCGGCGGAGGAGAGCTATCGCGGCCAAGATTTATGCCGGCCTTAGGGCTCAGGGAAACTTCAACTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCTCTCTGTGCTGATGCTGGTTGGACTGTCGAAGATGATGGAACCACTTATCGGAAGGGATGCAAGCCACCTCCAATGAGCATCGTTGGTACTTCCACTAGAATCACGCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGCCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCCTTTCCGAGCCCGTCCCATCTGGACGCCGACAATCCATCGAACCTCATTCCGTATCTTCGCCAAGCAATTCCCAGATCACTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCTCAATTGGGAGGTCACTGCTAAGGAATCCTTCTCCTCCTTGAACTACCCTTTCTTTGCAGTATCTGCCCCTGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCACCACGATCCACGAATGTGATGAGTCTGAATCATCCACCAACGCTTCCAATCAATGGGCATTTCTCCATGCCTATCCCCAATCCACATTGACAATGCCAACGTCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGATCTGCAGGGAGGCTTCATCAAGGAAAATGGAAGAGGAAGTGAATTCGAGTTCTTGGGCCGTAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAACTCACACTTGGTAGTAGCAGTAAGGCTTGA 1005 52.34 MKGIERLGSCTPTPHAIFASDRREMTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCKPPPMSIVGTSTRITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSHLDADNPSNLIPYLRQAIPRSLPPLRISNSAPVTPPLSSPASRTPQPFLNWEVTAKESFSSLNYPFFAVSAPASPTRPQLHTPTTIHECDESESSTNASNQWAFLHAYPQSTLTMPTSPTFNLVKPADQHDLQGGFIKENGRGSEFEFLGRKVKPWEGEKIHEVGLEDLELTLGSSSKA 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2541382 2544652 - CmaCh12G004890.1 Cma12g00489 304979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00489 334 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 25 332 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma12g00489 334 MobiDBLite consensus disorder prediction 38 53 - -
Cma12g00489 334 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 25 332 - -
Cma12g00489 334 Pfam BES1/BZR1 plant transcription factor, N-terminal 37 160 IPR008540 -
Cma12g00489 334 MobiDBLite consensus disorder prediction 182 201 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 180 201 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 1 53 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 119 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00775 Cma-Chr3:6022602 Cma12g00489 Cma-Chr12:2541382 8.61E-80 dispersed
Cma07g00508 Cma-Chr7:2196728 Cma12g00489 Cma-Chr12:2541382 1.58E-89 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma13g00580 Cma-Chr13:5806691 2.17E-40 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma05g00226 Cma-Chr5:963953 5.22E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35987 PF05687 BES1_N 1.30E-61 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00489 K14503 - csv:101219853 487.648