Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00489 ATGAAGGGGATAGAGCGCTTGGGATCATGTACCCCCACCCCTCACGCAATCTTCGCTTCAGATCGCCGGGAAATGACCTCCGACGGGGCTACTTCTGCCTCCACTTGCCGCCGGAAGCCGTCATGGAGGGAGCGGGAGAATAATCGAACCAGAGAGCGGCGGAGGAGAGCTATCGCGGCCAAGATTTATGCCGGCCTTAGGGCTCAGGGAAACTTCAACTTGCCTAAACATTGTGACAATAACGAGGTCCTTAAAGCTCTCTGTGCTGATGCTGGTTGGACTGTCGAAGATGATGGAACCACTTATCGGAAGGGATGCAAGCCACCTCCAATGAGCATCGTTGGTACTTCCACTAGAATCACGCCCTACTCTTCCCAAAATCCAAGCCCATTGTCTTCTTCATTCCCTAGCCCTATGGCATCCTACCAAGTCAGCCCCTCCTCCTCCTCCTTTCCGAGCCCGTCCCATCTGGACGCCGACAATCCATCGAACCTCATTCCGTATCTTCGCCAAGCAATTCCCAGATCACTTCCTCCTCTTAGAATCTCAAACAGTGCTCCTGTGACCCCTCCCCTTTCATCCCCAGCCTCAAGAACTCCACAGCCATTCCTCAATTGGGAGGTCACTGCTAAGGAATCCTTCTCCTCCTTGAACTACCCTTTCTTTGCAGTATCTGCCCCTGCTAGCCCAACTCGCCCTCAGCTGCATACTCCCACCACGATCCACGAATGTGATGAGTCTGAATCATCCACCAACGCTTCCAATCAATGGGCATTTCTCCATGCCTATCCCCAATCCACATTGACAATGCCAACGTCTCCCACATTCAACCTTGTGAAGCCTGCTGACCAGCATGATCTGCAGGGAGGCTTCATCAAGGAAAATGGAAGAGGAAGTGAATTCGAGTTCTTGGGCCGTAAGGTTAAGCCTTGGGAAGGGGAGAAGATCCATGAAGTCGGATTGGAGGATTTGGAACTCACACTTGGTAGTAGCAGTAAGGCTTGA 1005 52.34 MKGIERLGSCTPTPHAIFASDRREMTSDGATSASTCRRKPSWRERENNRTRERRRRAIAAKIYAGLRAQGNFNLPKHCDNNEVLKALCADAGWTVEDDGTTYRKGCKPPPMSIVGTSTRITPYSSQNPSPLSSSFPSPMASYQVSPSSSSFPSPSHLDADNPSNLIPYLRQAIPRSLPPLRISNSAPVTPPLSSPASRTPQPFLNWEVTAKESFSSLNYPFFAVSAPASPTRPQLHTPTTIHECDESESSTNASNQWAFLHAYPQSTLTMPTSPTFNLVKPADQHDLQGGFIKENGRGSEFEFLGRKVKPWEGEKIHEVGLEDLELTLGSSSKA 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2541382 2544652 - CmaCh12G004890.1 Cma12g00489 304979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00489 334 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 25 332 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma12g00489 334 MobiDBLite consensus disorder prediction 38 53 - -
Cma12g00489 334 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 25 332 - -
Cma12g00489 334 Pfam BES1/BZR1 plant transcription factor, N-terminal 37 160 IPR008540 -
Cma12g00489 334 MobiDBLite consensus disorder prediction 182 201 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 180 201 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 1 53 - -
Cma12g00489 334 MobiDBLite consensus disorder prediction 119 157 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00489 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101219853 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00775 Cma-Chr3:6022602 Cma12g00489 Cma-Chr12:2541382 8.61E-80 dispersed
Cma07g00508 Cma-Chr7:2196728 Cma12g00489 Cma-Chr12:2541382 1.58E-89 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma13g00580 Cma-Chr13:5806691 2.17E-40 dispersed
Cma12g00489 Cma-Chr12:2541382 Cma05g00226 Cma-Chr5:963953 5.22E-160 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g898 Blo01g01552 . Bda01g00543 Bda03g00253 Bpe02g00402 Bpe04g00207 Bma04g00201 Bma01g02306 Cmo05g00234 Cmo12g00435 . . . Car12g00460 Sed10g1328 . Cpe07g00438 Bhi04g00271 Tan02g1938 Cmetu03g0632 . Hepe10g0663 . Lcy13g2004 Cla08g01510 Cam08g1999 Cec08g1575 Cco08g1711 Clacu08g1689 . Cre08g1472 Cone4ag1892 Cone7ag1804 . . . . . Cme03g01975 . . . . . . . . . . . Cma12g00489 . . . Cpe11g00187 . . . . . . . . . . . . . . . Lsi08g01414 Csa02g02032 Chy03g01481 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G75080 59.2 2.1e-81 300.1
Cma03g00775 CST 632 922 BZR Transcription Factor Family AT1G75080 58.4 1.6e-78 290.4
Cma07g00508 CST 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.6e-78 289.3
Cma05g00226 CST 33 298 BZR Transcription Factor Family AT1G75080 61.6 4.8e-78 288.9
Cma12g00489 . 25 330 BZR Transcription Factor Family AT1G19350 57.0 3.6e-78 289.3
Cma03g00775 CST 632 921 BZR Transcription Factor Family AT1G19350 59.2 4.7e-78 288.9
Cma07g00508 CST 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.4e-77 287.3
Cma05g00226 CST 33 299 BZR Transcription Factor Family AT1G19350 60.3 3.1e-77 286.2
Cma03g00775 CST 611 917 BZR Transcription Factor Family AT3G50750 57.9 2.1e-76 283.1
Cma07g00508 CST 10 323 BZR Transcription Factor Family AT3G50750 56.6 2.8e-76 282.7
Cma05g00226 CST 1 293 BZR Transcription Factor Family AT3G50750 50.5 6.5e-57 218.4
Cma04g00664 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 2.2e-49 193.0
Cma18g00433 CST 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.4e-48 190.3
Cma16g00431 . 77 325 BZR Transcription Factor Family AT4G18890 52.6 9.2e-48 187.6
Cma04g00664 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.3e-117 420.2
Cma16g00431 . 1 325 BZR Transcription Factor Family AT1G78700 71.0 1.3e-112 403.7
Cma18g00433 CST 1 326 BZR Transcription Factor Family AT1G78700 69.2 4.1e-103 372.1
Cma13g00580 CST 1 342 BZR Transcription Factor Family AT1G78700 65.2 2.0e-102 369.8
Cma03g00775 CST 632 804 BZR Transcription Factor Family AT4G36780 78.5 1.2e-63 240.7
Cma07g00508 CST 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.7e-60 229.6
Cma05g00226 CST 33 197 BZR Transcription Factor Family AT4G36780 56.5 7.2e-37 151.8
Cma12g00489 . 57 228 BZR Transcription Factor Family AT4G36780 56.2 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007707 2 1 1 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35987 PF05687 BES1_N 1.30E-61 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00489 Cma_Chr12 FPKM 38.264179 38.116058 43.969437 41.79517 34.679962 36.27441 29.809803 83.248863 90.540848 77.89872