Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00491 ATGACTCCTTCAACAGGCACCTCTCCAGCTACACTTGATTTATTTGTTACTGAAAAGGAGGTTTGTCGGGTATTAAGAAGGATATCGAATGGAGATCCTCTTCCAGAAAATGTTCTTGTTGGTATAGATCCTCACCAATTTAAACCCGAAAATTTACCAGATGGTGTTTGGTTTTACGGAAAGTGTGATGGAAATTCCGACTCAAGTTGGAGGCGGCAGGGTGGAGATATTAAACTGTATTCAGACTCTTTCTTCACTGGATGGAGAGCCACTTTTGAATACTATGAAGGTCAAGCACCTCATGAGCATAAAACAGCCTGGGTTATGTACGTGTACTGGACGACTGATTCAGGCACGAGCGGAAACAGCAAGCAAAGGGAAACTAGCTCACTCTGCAAACTCTTTATTGGAGATGAACAGTTTCAAAGCCCTGAAAAGATTCAGAAAATCGAACTTTCTACCATTCCCAATTCAGAATCTATCAACCAAAATCACCAGTTGGTTGTTCCAGATGGTTCAAATAACATGGAAAATGGATCCACAAACCAGCCTGAGAATAGTTATCATCATCGGAAACTGATCACTCCCTTGTTCTTCTCCCCCTTGCTTCTTTGCTCGATGCGTGAAGTGATCCGTTCTGATATGGATTATATTTCGAGAGGCGACTTCTTAGAAATTCTGGATTTAGATACCCCAGCATCTTCATCATCAAGTTCTGAAAATTCTAGTCGCGTGTCCTTTACTTCAGATGATTGTTTTGATCCAATGGCGCTACTAAGAGACATAGACCATGACAATAACTTCAACTCGGTAGAAAGAGATGCTGCCTGCATCAGATCCTCTGCACCCATCAGACTAAGGACGGAGGTGGTGCATCAAGGAGGTTCAGAATCTCTTTTCGATACCAATGGAAGCCACTTACCAGGCAAAGAGAGTCCAAAACCCGAGTCGGTAGTGCCCAGTTCAGGGTGCAAAGAACCAGAGCTGTTGAAAGGGGAGGCATCATCAAGCTGTCAGAACAAGGAGGTGGCAAAAGGTAAAGAAGCAGCAGCCATGGATGGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAGCATTAGCAGAATGAAGAAGATTCAGAAAAAGTACTTCTGCTTCTTCTTCTCATTTTAG 1149 43.08 MTPSTGTSPATLDLFVTEKEVCRVLRRISNGDPLPENVLVGIDPHQFKPENLPDGVWFYGKCDGNSDSSWRRQGGDIKLYSDSFFTGWRATFEYYEGQAPHEHKTAWVMYVYWTTDSGTSGNSKQRETSSLCKLFIGDEQFQSPEKIQKIELSTIPNSESINQNHQLVVPDGSNNMENGSTNQPENSYHHRKLITPLFFSPLLLCSMREVIRSDMDYISRGDFLEILDLDTPASSSSSSENSSRVSFTSDDCFDPMALLRDIDHDNNFNSVERDAACIRSSAPIRLRTEVVHQGGSESLFDTNGSHLPGKESPKPESVVPSSGCKEPELLKGEASSSCQNKEVAKGKEAAAMDGGKKKKKKKKSISRMKKIQKKYFCFFFSF 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2551257 2554708 + CmaCh12G004910.1 Cma12g00491 304981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00491 382 ProSiteProfiles NAC domain profile. 7 137 IPR003441 GO:0003677|GO:0006355
Cma12g00491 382 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 10 363 - -
Cma12g00491 382 Gene3D NAC domain 17 140 IPR036093 GO:0003677|GO:0006355
Cma12g00491 382 PANTHER NO APICAL MERISTEM PROTEIN, EXPRESSED 10 363 - -
Cma12g00491 382 SUPERFAMILY NAC domain 19 136 IPR036093 GO:0003677|GO:0006355
Cma12g00491 382 MobiDBLite consensus disorder prediction 295 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00491 - - - cpep:111799119 620.928
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g00225 Cma12g00491 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00491 Cma-Chr12:2551257 Cma02g01602 Cma-Chr2:9104230 1.06E-08 dispersed
Cma12g00491 Cma-Chr12:2551257 Cma05g00225 Cma-Chr5:956264 7.24E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g894 . Blo12g00912 Bda01g00544 . Bpe02g00403 . . Bma01g02305 Cmo05g00232 Cmo12g00438 . . . Car12g00462 . . Cpe07g00440 Bhi04g00274 Tan02g1932 . . Hepe10g0668 . Lcy13g2006 Cla08g01512 Cam08g2001 Cec08g1577 Cco08g1713 Clacu08g1691 . Cre08g1474 . . Cone17ag1323 Cone20ag0153 . . . Cme03g01977 . . . . . . . . . . . Cma12g00491 Cma05g00225 Car05g00187 . Cpe11g00186 . . . . . . . . . . . . . . . Lsi08g01416 Csa02g02029 Chy03g01483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003745 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 3 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00491 Cma_Chr12 FPKM 38.324005 37.83672 26.794928 26.175703 18.145838 19.80504 21.810762 48.165539 46.331039 50.900711