Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00492 ATGATTGAAGCTGTGCAGAGATCCATCAATGGCGCTTTCTCGCAGTTTCAGAGCTGTGGGGATAGCAGCGAGGAGGAGCTTTCGGTTCTTCCTCGCCATACTAAGGTTGTCGTTACCGGAAATAATCGGACCAAATCGGTTCTCGTCGGGCTTCATGGCGTCGTCAAGAAAGCCGTCGGTCTTGGCGGCTGGCATTGGCTGGTTTTAACAAATGGTATAGAGGTGAAACTACAGCGGAATGCGCTTAGTGTGATCGAGGCTCCAACGGGCAATGAAGAAGACGATGAACTCGAATTCGAGAACTCGACATGGAATGGATTGGATATGGCATCTGATGACGCCCAAAAATCCCACAAATCAAGGCATAAATTTCACAAATCATGTGGGTCATCACACAAGACTATAAGCAGATCCTTTTCCTGTGACTCACAGTCGAAGAGCTCGGTTTCTGCACCGCAACGATCCATGAGGGTTGACCTTAGTAAACTAGAGATGACTGCATTGTGGAGATATTGGCGACACTTCAATCTCGTTGATGCCTTTCCCAACCCGTCGAAAGAGCAATTAGTAGATCTAGTTCAAAGGCATTTCATGTCACTGCAACTGGATGAGTTGCAGGTTATAATGGGTTTTGTGAAGGCTGCAAAGAGACTGAAAACAGTGTGCAAATGA 672 46.88 MIEAVQRSINGAFSQFQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLHGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDELEFENSTWNGLDMASDDAQKSHKSRHKFHKSCGSSHKTISRSFSCDSQSKSSVSAPQRSMRVDLSKLEMTALWRYWRHFNLVDAFPNPSKEQLVDLVQRHFMSLQLDELQVIMGFVKAAKRLKTVCK 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2557865 2560500 + CmaCh12G004920.1 Cma12g00492 304982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00492 223 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 163 216 IPR025718 GO:0005515
Cma12g00492 223 Gene3D - 138 223 IPR038291 -
Cma12g00492 223 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 1 223 - -
Cma12g00492 223 PANTHER SAP30 1 223 IPR024145 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00492 - - - csv:101220556 399.438
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma01g01889 Cma12g00492 CCT
Cma09g00173 Cma12g00492 CCT
Cma09g00173 Cma12g00492 ECH
Cma01g01889 Cma12g00492 ECH
Cma05g00224 Cma12g00492 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01889 Cma-Chr1:12375781 Cma12g00492 Cma-Chr12:2557865 7.70E-141 wgd
Cma12g00492 Cma-Chr12:2557865 Cma05g00224 Cma-Chr5:950454 1.32E-115 wgd
Cma12g00492 Cma-Chr12:2557865 Cma09g00173 Cma-Chr9:742086 3.95E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g893 . . Bda01g00545 Bda03g00252 Bpe02g00404 Bpe04g00205 Bma04g00200 Bma01g02304 Cmo05g00231 Cmo12g00439 Cma01g01889 Cma09g00173 Car01g01473 Car12g00463 Sed11g1009 Cpe06g00123 Cpe07g00441 Bhi04g00276 Tan02g1929 Cmetu03g0326 . Hepe10g0669 . Lcy13g2008 Cla08g01513 Cam08g2002 Cec08g1579 Cco08g1714 Clacu08g1692 . Cre08g1475 Cone4ag1891 Cone7ag1803 Cone17ag1322 Cone20ag0154 Lsi04g01640 Csa03g04183 Chy04g00534 Cme03g01978 Blo17g00813 . Bda08g01298 . . Bpe05g00078 . Bma05g00108 . Cmo01g01952 Cmo09g00170 Cma12g00492 Cma05g00224 Car05g00186 Car09g00155 Cpe11g00185 Cpe02g00143 . . . . . . . Cla05g01962 Cam05g2112 Cec05g2123 Cco05g2176 Clacu05g2101 Cmu05g1977 Cre05g2096 Lsi08g01417 Csa02g02027 Chy03g01484 Cme04g00614
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001291 3 3 1 3 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00492 Cma_Chr12 FPKM 8.860136 9.918736 7.585773 9.689275 33.275913 32.325577 34.948284 2.444907 2.703948 2.336239