Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma12g00497 | ATGGCGAGCGGGTTTGGGGAATCAACAAGTAGGCAACCTCAAAGCCCTTCGTGTTCCGACAACAATGGTGATGCTAGTAATTTTGAGTGCAATATTTGCCTGGATTTAGCTCAAGATCCTATTGTAACCCTATGTGGTCATCTTTTTTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAATGTCCAGTTTGTAAAGCTATGATAGAAGAGCAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACTGACCCGAGATCGAAAAGTATTCCGGGAGTTAATATTCCCAATCGTCCTGCAGGACAGAGGCCGGAAGCAGCAGGCCCTCCACCAGAGCCAAATCCTTTTGCTCACAATGGATTTGGATTCATGGGAGGTCTTGGAGGGTTTGCTCCAACGGCTTCAACAAGGTTTGGTAATTTCACATTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTGTTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACTTTCCATATGGGTTTCCTAACATGTTTCATGGTAGCCATGGCCATGGCCATGGCCATGCTCATGCTCATGGATACTATCACCATCTCCGTCAAGAAGTTCAGAATATACAGATGGGTTTCTGCTGCACATGGTACTACCAGAAACTTGTTCATCAGATTGCGTTTAGCTATGGTTCTATCCATGTTCGTGAAATACGTCGTTCTGATCGAAAGGAGCAGGACAAGGATCAGGATCATCACCCCTTGATACCATGTTGGGAACTAGTAGCTTTCCTCCTTCCTCACTTCCCCTCGCCGGCCGCCGTCATGTTTAAACCTCCTGCCGCCCTTCTCTTCTTCATTTTCTCCTTGACTGCCGTCAATGCCACCGTTCTATTCAAGGAGGCACCCCAATTCTACAACTCCCCTGACTGCCCCTCTGTTTTCGACGGTGAGGAAAACACCAACCGTCTCTGCTCGGACGATGGCATCCACGTTGCGATGACATTGGACACCGCTTACATCCGGGGCTCCATGGCGGCGATCCTCTCCGTTCTGCAACATTCGTCCTGTCCCCAAAATGTAATCTTCCATTTTGTTTCCTCTGCTTCTGCAAATGCTCTGTCTCTACACGCCATCATTTCCACCTCCTTTCCTTATCTTAAATTCAAAATCTACCCCTTCGACGATGTCGCTGTGTCCCGTTTGATCTCCACCTCCATCCGCTCTGCCTTGGATTGTCCATTGAACTATGCTCGTAGCTACTTGGCTGACCTCCTCCCCATCTGCGTCCGCCGTGTCGTCTATCTCGATTCCGATATAATCCTCGTTGACGACATCGCTAACCTTGCCAACACTCCTCTTAACGACGCCGTCCTCGCTGCCCCTGAGTACTGCAACGCCAATTTCACGGCCTATTTCACTCCCACTTTCTGGTCCAATCCCTCTCTGTCTCTCACCTTCGCCAATCGCAGCCCCTGTTACTTCAATACCGGTGTCATGGTCATCGACCTCTCCCGGTGGCGCCTTGGCGACTTTACCGCCGAAATCGAAGAATGGATGGAGCTTCAGAAGAGAATGAGGATCTACGAGCTTGGATCTCTACCGCCGTTCATGCTTGTTTTCGCCGGAAACATCGTCCCCGTCGACCACCGGTGGAACCAGCACGGCCTCGGCGGGGATAATTTCCAGGGACTCTGCCGGGATCTACACCCGGGTCCGGTGAGCCTGTTGCATTGGAGTGGAAAGGGGAAGCCATGGGCCCGGGTGGATGCGAACCGGCCGTGTCCGTTGGACTCTCTATGGGTCCCTTATGATCTGTTGCAGACTCCATTTTCGTTGGATTCTTGA | 1869 | 50.62 | MASGFGESTSRQPQSPSCSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKAMIEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPAGQRPEAAGPPPEPNPFAHNGFGFMGGLGGFAPTASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANFPYGFPNMFHGSHGHGHGHAHAHGYYHHLRQEVQNIQMGFCCTWYYQKLVHQIAFSYGSIHVREIRRSDRKEQDKDQDHHPLIPCWELVAFLLPHFPSPAAVMFKPPAALLFFIFSLTAVNATVLFKEAPQFYNSPDCPSVFDGEENTNRLCSDDGIHVAMTLDTAYIRGSMAAILSVLQHSSCPQNVIFHFVSSASANALSLHAIISTSFPYLKFKIYPFDDVAVSRLISTSIRSALDCPLNYARSYLADLLPICVRRVVYLDSDIILVDDIANLANTPLNDAVLAAPEYCNANFTAYFTPTFWSNPSLSLTFANRSPCYFNTGVMVIDLSRWRLGDFTAEIEEWMELQKRMRIYELGSLPPFMLVFAGNIVPVDHRWNQHGLGGDNFQGLCRDLHPGPVSLLHWSGKGKPWARVDANRPCPLDSLWVPYDLLQTPFSLDS | 622 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2578149 | 2581414 | + | CmaCh12G004970.1 | Cma12g00497 | 304987 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma12g00497 | 622 | Pfam | Glycosyl transferase family 8 | 338 | 595 | IPR002495 | GO:0016757 | |
| Cma12g00497 | 622 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 84 | IPR013083 | - | |
| Cma12g00497 | 622 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cma12g00497 | 622 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 338 | 603 | IPR029044 | - | |
| Cma12g00497 | 622 | CDD | RING-HC_AtRMA_like | 28 | 72 | - | - | |
| Cma12g00497 | 622 | MobiDBLite | consensus disorder prediction | 84 | 122 | - | - | |
| Cma12g00497 | 622 | Pfam | Zinc finger, C3HC4 type (RING finger) | 27 | 76 | - | - | |
| Cma12g00497 | 622 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - | |
| Cma12g00497 | 622 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
| Cma12g00497 | 622 | PANTHER | GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED | 295 | 622 | - | - | |
| Cma12g00497 | 622 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
| Cma12g00497 | 622 | PANTHER | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | 295 | 622 | - | - | |
| Cma12g00497 | 622 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
| Cma12g00497 | 622 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 337 | 613 | IPR029044 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma01g01887 | Cma12g00497 | CCT | |
| Cma09g00176 | Cma12g00497 | CCT | |
| Cma01g01887 | Cma12g00497 | ECH | |
| Cma09g00176 | Cma12g00497 | ECH | |
| Cma05g00219 | Cma12g00497 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g01031 | Cma-Chr3:7174462 | Cma12g00497 | Cma-Chr12:2578149 | 1.37E-66 | dispersed | |
| Cma05g00220 | Cma-Chr5:929144 | Cma12g00497 | Cma-Chr12:2578149 | 3.22E-110 | dispersed | |
| Cma07g00752 | Cma-Chr7:3339684 | Cma12g00497 | Cma-Chr12:2578149 | 1.94E-64 | dispersed | |
| Cma08g00450 | Cma-Chr8:2531399 | Cma12g00497 | Cma-Chr12:2578149 | 3.16E-133 | dispersed | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma17g01058 | Cma-Chr17:7577460 | 1.07E-130 | dispersed | |
| Cma14g00411 | Cma-Chr14:1923257 | Cma12g00497 | Cma-Chr12:2578149 | 1.58E-27 | dispersed | |
| Cma14g01031 | Cma-Chr14:5440296 | Cma12g00497 | Cma-Chr12:2578149 | 3.00E-22 | dispersed | |
| Cma01g01887 | Cma-Chr1:12360780 | Cma12g00497 | Cma-Chr12:2578149 | 1.64E-134 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma03g01030 | Cma-Chr3:7170241 | 1.13E-174 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma05g00219 | Cma-Chr5:926435 | 0 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma07g00751 | Cma-Chr7:3335630 | 1.82E-174 | wgd | |
| Cma12g00497 | Cma-Chr12:2578149 | Cma09g00176 | Cma-Chr9:749396 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma12g00497 | K20893 | - | csv:101218422 | 628.246 |