Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00500 ATGGCAGCCACAAGATTGCTCCGGTCGGTTCGGCCTTCTGCCACCGTGGTGTCTTCTTCTTCATCATCGCCATCGACGGCGGCGAATGTGAGGTGCTTGGTCAAAACAGGGCTAAATTCAAAAAATGGCGAACGGTTAATAACCTCCGGCGACGGTGAGAGAAGACAGATAGTCAACCTTAAGGCGGCTGCGGCGGCGGCGGCGGCGGCTCCAGAGACTGTGGAGACGAAAACTAGAGAACTCGATTTGGGTTCTTTGCTGGCGAATCTACTCGTTCAATTGAAGAATACGGCGGTGAAGAAAAAGATTCGGAGGCGACAGATTCAGAAATTCATCGAAAAGATCATAATCAACTGCCGATTCTTTACATTATTCGCCGTCGCCGGATCTTTACTGGGTTCGATTCTATGTTTCCTTGAGGGGAGCTTTATTGTTGCAGAGTCTTATCTGCAGTATTTTAATAGCGTTTCACGGAGACATGTTCTTGGTTGGAACTGCTCTGGTTGTTTTCGGTGTCGGATTGTTCGCGATGTTCGTCGGATCGGAGAAGATGACGGAAAAGAACCGGCGAACATTCCGACATGGGTGGAAATGGAATCGGTGTCGGAGGCGAAGTCGAAGATCGGACACGCGGTGATGATGATACTACAAGTGGGTGTGTTGGAGAAGTTGAAGAGTATACCTTTGAGCTCCGCCGCCGATCTCGCCTGTTTCGCCGCCGCCATTCTGATTTTCTCCGCCTCCATCTTCTTCCTCTCCAGACTCAACATAGGCGGCGGCAGCCGCGACGGTTACAATTCTTCTGATTGCAAAACAGTGATTGATACTAGTGGCATTTCTCCAAGTGCTGTGGCTTCGGAGGTTCGAATCATGTGTGACCTCGAGCAGACGGAACCGTCGTGGACTGTTAAACATATTGGAGGGGCAATGAGAGGTTCAGGTGCTGAACAACTCTCTGTTCTGGTTAGGACAATGGTAGAAAGCAAAGTTAGCAAGAACGTGCTTCGTTTATTCTATGCGCTTGGCTATAAGTTAGACCATGAGCTGCTGAGAGTTGGGTTTTCTTTCCGATTCCACCGGGGCACTCATATAACAGTGACGGTTTCTTCAGTTAATAAGATGTTGAAGCTTCATTCGACCGATGAGGCTGTACCTGTAACACCTGGTATACAGCTAGTTGAAGTGACAGCCCCAGCAACTTCTGAAAACTACTCCGAAGTAGCCAGTGCAGTGTCAACGTTCTGTGAATATCTTGCACCGCTGCTGCATTTGTCAAAACCTGGAATATCCACAGGTGTTGTTCCTACAGCTGCTGCCGCCGCAGCATCTCTCCTCTCCGATGGCGCTGGAACGACAATGTAG 1362 49.49 MAATRLLRSVRPSATVVSSSSSSPSTAANVRCLVKTGLNSKNGERLITSGDGERRQIVNLKAAAAAAAAAPETVETKTRELDLGSLLANLLVQLKNTAVKKKIRRRQIQKFIEKIIINCRFFTLFAVAGSLLGSILCFLEGSFIVAESYLQYFNSVSRRHVLGWNCSGCFRCRIVRDVRRIGEDDGKEPANIPTWVEMESVSEAKSKIGHAVMMILQVGVLEKLKSIPLSSAADLACFAAAILIFSASIFFLSRLNIGGGSRDGYNSSDCKTVIDTSGISPSAVASEVRIMCDLEQTEPSWTVKHIGGAMRGSGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFSFRFHRGTHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSENYSEVASAVSTFCEYLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2593578 2598067 - CmaCh12G005000.1 Cma12g00500 304990

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00500 453 PANTHER OS06G0710300 PROTEIN 191 258 - -
Cma12g00500 453 PANTHER EXPRESSED PROTEIN 191 258 - -
Cma12g00500 453 Gene3D - 262 426 - -
Cma12g00500 453 PANTHER OS06G0710300 PROTEIN 1 159 - -
Cma12g00500 453 PANTHER EXPRESSED PROTEIN 1 159 - -
Cma12g00500 453 Pfam Uncharacterized protein family, UPF0114 116 155 IPR005134 -
Cma12g00500 453 Pfam Uncharacterized protein family, UPF0114 187 223 IPR005134 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00500 K15135 MED18; mediator of RNA polymerase II transcription subunit 18 - csv:101221500 317.775
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00500 Cma-Chr12:2593578 Cma14g00987 Cma-Chr14:5181278 4.09E-12 dispersed
Cma12g00500 Cma-Chr12:2593578 Cma09g00757 Cma-Chr9:3637862 1.22E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g866 Blo01g01547 . . . Bpe02g00410 . . . . . . . . Car12g00470 Sed10g1307 . Cpe07g00448 Bhi04g00291 Tan02g1917 Cmetu03g1977 . Hepe10g0682 . Lcy13g2016 . . . . . . . Cone4ag1884 Cone7ag1792 . . . . . Cme03g01989 . . . . . . . . . . . Cma12g00500 . . . . . . . . . . . . . . . . . . . . Csa02g02016 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011023 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00500 Cma_Chr12 FPKM 4.785882 6.946198 11.539161 11.930789 5.185543 4.81911 5.246808 11.540095 11.806507 13.647557