Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00506 ATGTTCACCTCCTCCCATCCCACCACGCCTCCTCCCCTCCCGGACCTCTCCTTGCACATAAGTCCGCCCTCCAATTCCGGCAGCACCGGCAGCGATCTCAGCCATGAAACTGCCGCCGCAACTGGGTTTTATCTTCCGGCTAAACCCCATATGGGTCTACCTCTTGAGCTTGAAACAAGCTTCAACAATGGCCGCCATTTTAACGACCACCTACCTCAAATCTATGGCCGCCATTTTAAAAGAGCTGCAAAAATGGGTATTAGAGCTCCAAGAATGAGATGGACTACAACGCTTCATGCTCATTTTGTCCATGCCGTTCAGCTGCTTGGCGGCCATGAAAGGGCAACACCAAAATCTGTTTTGGAGCTTATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGTCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAATCAACTGCCTTGAAGAACCAAAGACAAGAAGTTGATCCAAGTGGTGCTGAGATCTCTAACCCAATGTGGAAAAGCTCTGATCAAATGTGA 537 47.67 MFTSSHPTTPPPLPDLSLHISPPSNSGSTGSDLSHETAAATGFYLPAKPHMGLPLELETSFNNGRHFNDHLPQIYGRHFKRAAKMGIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKSTALKNQRQEVDPSGAEISNPMWKSSDQM 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2616517 2617871 - CmaCh12G005060.1 Cma12g00506 304996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00506 178 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 14 157 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cma12g00506 178 SUPERFAMILY Homeodomain-like 87 144 IPR009057 -
Cma12g00506 178 Gene3D - 89 146 - -
Cma12g00506 178 MobiDBLite consensus disorder prediction 19 34 - -
Cma12g00506 178 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 143 IPR006447 GO:0003677
Cma12g00506 178 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 14 157 - -
Cma12g00506 178 MobiDBLite consensus disorder prediction 147 178 - -
Cma12g00506 178 MobiDBLite consensus disorder prediction 1 34 - -
Cma12g00506 178 Pfam Myb-like DNA-binding domain 91 142 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma09g00194 Cma12g00506 CCT
Cma05g00213 Cma12g00506 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00506 Cma-Chr12:2616517 Cma19g00216 Cma-Chr19:1456269 7.92E-36 dispersed
Cma01g01879 Cma-Chr1:12314351 Cma12g00506 Cma-Chr12:2616517 1.51E-40 wgd
Cma12g00506 Cma-Chr12:2616517 Cma05g00213 Cma-Chr5:902076 2.79E-54 wgd
Cma12g00506 Cma-Chr12:2616517 Cma09g00194 Cma-Chr9:809303 6.03E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35989 PF00249 Myb_DNA-binding 5.00E-06 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00506 - - cpep:111799190 343.584