Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g00511 ATGGCTATTCGAGTTACCCTCTCCTACTCCGGCTATGTTGCCCAAAACCTAGCTTCATCCACCGGCCTTCGGGCCGGTAACTGCCGCGTTTTTCAGGAGTGTTGGGTCCGATCTTGTATTTTTGGCTCAAGCCATAATCCGGACCTCAAATCTGCTGGAAGCGCGCGCAATTATCGGTCTGATAGCCGGCGGTTTAAGCCGAGTTGTTCTTCTATGTACAGCGCTCTCCCGGGAGAAATGGTTGGGGAAAACCCTAAGAGTCCAATGATTTTGGGTTTGATTTCGATGCTGAAATCGATGGCGTCTGCTTCTGGATCTTCTCCGACCTCCACAGGGATTTTGGGGGTTTCTTCATTTAAAGCCACTTCGATTATCCCCTTTCTACGAGGCTCGAATTGGCTTCCGGGTTACGATATACGATCTCATGTAAGTGGGAGTGATGAGTTTTATGAGAGTGATTTTGAGAAGAGCAGCTGGGTTTCGCGCTTGTTGAATACCTATTCCGATGATGCTAAGGCTCTGTTTACGGCTTTGACTGTTAGTGTGCTCTTTAAATCGTTCTTGGCGGAGCCGAAATCGATTCCTTCTTCTTCCATGTATCCTACTCTGGAAGCAGGGGATCGTGTTTTAGCTGAAAAGGTTTCATACTTTTTCAGGAAACCTGAAGTTTCTGATATAGTGATCTTCAAACCTCCTAAGATCTTGCAGGAATTTGGAGTTAGTTCGAGTGAGGTGTTTATTAAGAGAGTTGTGGCTACGTCTGGGGACGTGGTTGAAGTTCGGAATGGGAAATTGGTGGTAAACAGTGTTGTTGAAGATGAGGACTTCATCTTAGAGCCAATTGCTTATGAGATGGATCCAATGCTTGTGCCTGAAGGTTATGTGTATGTAATGGGAGACAACCGTAACAATAGTTGTGATTCTCACAACTGGGGTCCGCTCCCGGTTGAAAATATCGTAGGAAGATCATTATTCAAGTACTGGCCTCCCCCCAAAGGATCCAGTGTGGTAGATGAACCACATGCAAAGAACATTAATCTGGGGATGTCCTGA 1053 46.15 MAIRVTLSYSGYVAQNLASSTGLRAGNCRVFQECWVRSCIFGSSHNPDLKSAGSARNYRSDSRRFKPSCSSMYSALPGEMVGENPKSPMILGLISMLKSMASASGSSPTSTGILGVSSFKATSIIPFLRGSNWLPGYDIRSHVSGSDEFYESDFEKSSWVSRLLNTYSDDAKALFTALTVSVLFKSFLAEPKSIPSSSMYPTLEAGDRVLAEKVSYFFRKPEVSDIVIFKPPKILQEFGVSSSEVFIKRVVATSGDVVEVRNGKLVVNSVVEDEDFILEPIAYEMDPMLVPEGYVYVMGDNRNNSCDSHNWGPLPVENIVGRSLFKYWPPPKGSSVVDEPHAKNINLGMS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2635418 2638341 + CmaCh12G005110.1 Cma12g00511 305001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g00511 350 ProSitePatterns Signal peptidases I serine active site. 196 203 IPR019756 GO:0004252|GO:0016021
Cma12g00511 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 187 203 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma12g00511 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 246 258 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma12g00511 350 PRINTS Bacterial leader peptidase 1 (S26A) family signature 290 309 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma12g00511 350 ProSitePatterns Signal peptidases I signature 3. 295 308 IPR019758 GO:0004252|GO:0016021
Cma12g00511 350 Gene3D Umud Fragment, subunit A 184 343 - -
Cma12g00511 350 Pfam Signal peptidase, peptidase S26 171 328 IPR019533 GO:0004252|GO:0006465
Cma12g00511 350 CDD S26_SPase_I 190 322 IPR019533 GO:0004252|GO:0006465
Cma12g00511 350 TIGRFAM sigpep_I_bact: signal peptidase I 172 329 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma12g00511 350 PANTHER SIGNAL PEPTIDASE I 1 346 IPR000223 GO:0006508|GO:0008236|GO:0016020
Cma12g00511 350 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 346 - -
Cma12g00511 350 SUPERFAMILY LexA/Signal peptidase 186 335 IPR036286 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g00511 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101222362 548.895
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00203 Cma12g00511 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00623 Cma-Chr10:2870160 Cma12g00511 Cma-Chr12:2635418 5.56E-77 dispersed
Cma11g00614 Cma-Chr11:2942582 Cma12g00511 Cma-Chr12:2635418 1.17E-76 dispersed
Cma12g00511 Cma-Chr12:2635418 Cma16g00447 Cma-Chr16:2231904 2.72E-10 dispersed
Cma12g00511 Cma-Chr12:2635418 Cma09g00203 Cma-Chr9:840371 2.32E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003030 2 2 1 1 1 1 2 2 1 2 1 1 2 2 2 2 1 2 2 1 2 2 2 2 3 2 1 3 4 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g00511 Cma_Chr12 FPKM 150.524261 155.847794 108.868896 115.640411 36.720901 28.932854 38.091915 168.807907 161.192429 189.875076